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Recent Votes
- C: trimming of fasta file
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- C: trimming of fasta file
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Recent Replies
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C: Merging bowtie output by
ATpoint ♦ 44k
Hello, I am not quite sure I understand. So you want to remove reads of mt origin from this paire...
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C: How to avoid building millions of BWA indices? by
GenoMax ♦ 94k
If the episome references are non-overlapping then I don't think you can `merge` the BAM files si...
-
C: Pairwise2 Alignment Gap Penalties by
trinityduke100 • 0
Yes but is this for substitutions(mismatch) errors? I have a particular sequence that is passed...
-
C: RNA-Seq, HTSeq-Counts, counts are ~1M less compared to the reference research pa by
xytwwwww • 0
Thank you for your reply! Also, ~1M loss in ~20M sounds very minor to me, would you agree on this?
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C: trimming of fasta file by
harry • 10
In previous questions, I asked about how to cut a sequence and rejoin. means cut in 2 equal parts...
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C: Merging bowtie output by
Mark • 840
Use the `samtools merge` to merge the bam files. Do not sure `cat` command.
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A: How to convert phylo object to hclust object in R by
engelbert_buxbaum • 0
Approach the problem from the other end: dist.dist <- as.dist(dist) DNA.hc <- hclu...
-
C: Getting alignments with lower scores on Biopython by
trinityduke100 • 0
So essentially I have to find all the paths from the right bottom corner to the top left corner? ...
-
C: Stringtie transcripts to Gene Name by
vkkodali • 2.4k
If you use a reference annotation file (`-G` parameter) at the time of transcript assembly using ...
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C: How to avoid building millions of BWA indices? by
Mark • 840
if this is about merging bam files, then samtools has the subcommand `merge`: http://www.htslib....
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C: RNA-Seq, HTSeq-Counts, counts are ~1M less compared to the reference research pa by
Mark • 840
In my opinion that's to be expected. Unless you match every piece of software and version, includ...
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C: trimming of fasta file by
Mark • 840
This is essentially alignment with trimming. You can do this with a GUI application like ugene, o...
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