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Has someone experience with the KOBAS (v. 3) standalone enrichment software?

standalone enrichment biopython kobas kegg written 3 months ago by t.bergmann • 0

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1.3k

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Troubleshooting interproscan standalone run

standalone interproscan bioinformatics written 3.6 years ago by arunprasanna83 • 40 • updated 6 months ago by Biostar ♦♦ 20

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2.0k

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Blast+ db problem

standalone makeblastdb blast written 4.4 years ago by Xylanaser • 60 • updated 22 months ago by RamRS ♦ 27k

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1.4k

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How to calculate the standalone interproscan output functionwise or domainwise?

standalone interproscan functional annotation written 4.4 years ago by mirza • 110 • updated 3.5 years ago by cgbm86 • 0

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803

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How to get one several fasts files in one text file from Blast+

standalone blast+ written 3.6 years ago by Mohamed Elrobh • 70

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1.3k

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Annotating the transcripts of a de novo plant transcriptome

standalone annotation blastx plant transcriptome written 4.4 years ago by Biogeek • 400 • updated 4.4 years ago by JC ♦ 10k

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1.9k

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Can OMA calculate orthologs for single query sequence?

standalone oma ortholog written 4.6 years ago by a.zielezinski ♦ 9.2k • updated 4.6 years ago by cyril-cros • 890

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1.8k

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Trouble obtaining chromosome number using standalone blastn

standalone alignment format blast blastn written 5.8 years ago by DVA • 540 • updated 5.8 years ago by Philipp Bayer ♦ 6.7k

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2.1k

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Connect to Standalone Clustalw using perl (in program)

perl standalone clustalw written 6.1 years ago by rajkishore.ouatbi • 10 • updated 6.1 years ago by Devon Ryan ♦ 95k

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Recent Replies

A: p value from multiple columns using R?? by Sam • 2.9k
Using data.table (assuming your data is called dt), you can do a t.test on each row with the foll...
C: igvtools count | wigToBigWig, pipe not working for some reason although stdout a by jennxyzhang • 0
Thank you very very much for your suggestions! Unfortunately I'm still getting that same pop up ...
C: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de by Umesh • 0
![enter image description here][1]I've uploaded the result which i get after the command, but i a...
C: Transcriptome analysis of two closely related plant species by Istvan Albert ♦♦ 84k
I would look into the concept called transcript integrity (TIN) to evaluate how well do the reads...
C: meaning of CheckM output by zhangdengwei • 60
Asaf, may I ask one more question? What's the meaning of `Marker lineage`? Based on my understand...
C: Definition of + and - strands for human genome by genomax ♦ 85k
See: https://www.biostars.org/p/3908/
C: UCSC Xena Probe to Gene mapping by RamRS ♦ 27k
I’ve found that in many cases where a single ENSG ID corresponds to multiple HGNC symbols, only o...
C: Definition of + and - strands for human genome by RamRS ♦ 27k
Check out this Wikipedia entry (the first result in googling “plus strand”): https://en.wikipedia...
C: Converting Gene Symbol to Ensembl ID in R by Harry_Wat • 0
Thank you very much!
C: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de by Pierre Lindenbaum ♦ 129k
From the 1st screenshot, I suspect you're using the wrong fasta reference . ![enter image desc...
A: igvtools count | wigToBigWig, pipe not working for some reason although stdout a by Pierre Lindenbaum ♦ 129k
try: igvtools count -w 10 -f median $file stdout hg19 | grep -v "Using system JDK" | wigToBi...
C: Survival analysis with gene expression by silsie645 • 0
Ok thanks. What about using the median as the cut-off point? This is because with the previous cu...

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