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Comment: How to extract cells of different species after mapping with combined genome?
by
Tony
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0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms.
Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
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Nyksubuz
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The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test
by
Nyksubuz
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You could use [this][1]
[1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
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Nyksubuz
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It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
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Thank you for your reply.
I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite
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dario.garvan
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It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
GenoMax
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Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful.
[1]: https://github.com/lastz/lastz
Comment: Collect dispersed executable files and run them by using bingo.
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Ram
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What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Comment: Merge clusters in Seurat UMAP
by
bk11
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2.4k
Can you try this?
library(dplyr)
seuratobj@meta.data <- seuratobj@meta.data %>%
mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
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Thank you for the response but it does not change anything.
Comment: Merge clusters in Seurat UMAP
by
bk11
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2.4k
I have not tested but you could try something like below-
seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0
seuratobj$seur…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
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Gabriel R.
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I know about it, isn't there a simple C++ static binary?
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
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Gabriel R.
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needle is great! but it does not handle sequences of 100k or so.
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Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
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txema.heredia
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The point is that you need to feed the ambient algorithm a clustering list as input. This way, it checks for genes present in the soup vs g…
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