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Paternity Testing from WGS Trio

trio wgs dna-seq paternity test written 4 weeks ago by ClkElf • 20 • updated 4 weeks ago by RamRS ♦ 18k

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Simulating Trio Data

trio genome simulation written 9 weeks ago by Ritu • 0 • updated 9 weeks ago by Len Trigg • 1.2k

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an alternative "join" option for annotated-vcf handling in trios

trio vcf written 8 months ago by emmanouil.a • 10 • updated 8 months ago by Pierre Lindenbaum ♦ 113k

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best practices in trio snp and cnv analysis

trio gwas snp cnv omni5 written 10 months ago by mcdm • 0

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672

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What kind of filtering can be applied to reduce my exonic variants?

exomeseq dnaseq trio snp variants written 18 months ago by bioinforesearchquestions • 180 • updated 10 months ago by Biostar ♦♦ 20

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does varscan2 trio mode perform joint genotyoing?

trio varscan joint genotyping variant germline written 11 months ago by lait • 120

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retrospective trio analysis from WGS SNPs

trio lineage pedigree variant snp written 13 months ago by harold.smith.tarheel • 4.2k • updated 13 months ago by andrew.j.skelton73 ♦ 5.3k

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Trios from 1kG

trio next-gen sequencing written 2.5 years ago by nayshool • 20

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Why the CEU trio's parents NA12891 and NA12892 are not in 1000 Genomes phase 3

genome 1000 genomes trio sequencing written 3.1 years ago by flow.genet • 20

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Recent Replies

C: How to remove batch effects when i have different organs? by ATpoint ♦ 8.0k
Can you give some more details on the library prep and sequencing platform. It is quiet unusual t...
C: Python Script to Calculate Total Number of genes by Bastien Hervé • 2.2k
Some points : - Please use the icon `101010` to format your text as code, it is much more reada...
C: Python Script to Calculate Total Number of genes by jrj.healey ♦ 7.6k
That is not how you utilise BioPython. Take a look at the link I gave you.
C: How do I get the strand of a read when using htslib? by Click downvote • 620
So if the above is true, the alignment is reverse. Thanks :)
A: How do I get the strand of a read when using htslib? by Alex Reynolds ♦ 26k
I think you could call the following for each read: bool is_reverse = bam_is_rev(aln); See:...
A: How do I get the strand of a read when using htslib? by Pierre Lindenbaum ♦ 113k
in sam.h: /*! @abstract the read is mapped to the reverse strand */ #define BAM_FREVERSE...
A: Analysis gff3 file by Juke-34 • 1.3k
The question is about statistics per gene. So my answer is maybe not petinent, but here is an ans...
C: Samtools view behaviour with skipped region from the reference (N in Cigar) by Pierre Lindenbaum ♦ 113k
> But I disagree with the Soft Clip/Hard Clip event : I aree the pseudocode because S and H a...
C: how to set metrics file when using MarkDuplicates in Picard by Yingzi Zhang • 40
Yes. I found that the Matrics is not an input file but an output file. Thank you!
A: How to separate a strain of MTB drug wise? by rizoic • 50
Incase you need a grep/awk based solution based on your tags. You can run something on these line...
C: Python Script to Calculate Total Number of genes by anasjamshed1994 • 0
>>> from Bio.Seq import Seq >>> genome = open("C:\\Users\\cnn\\Desktop\\MS(BI)\...
A: how to set metrics file when using MarkDuplicates in Picard by Paul • 1.1k
Hi, my syntax looks like: picard -Xmx"$memory"g -Djava.io.tmpdir=$PWD/tmp -XX:ParallelGCThre...

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