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Too many differentially expressed genes in voom
R limma rna-seq voom written 9 months ago by rzm00150 • updated 6 months ago by Ram32k
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How to choose threshold for filtering low counts before Voom transformation?
R limma rna-seq voom written 7 months ago by ihc.europa20 • updated 6 months ago by h.mon32k
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How to Interpreting voom : Mean-variance trend ?
limma rna-seq voom written 7 months ago by sunnykevin97140 • updated 7 months ago by h.mon32k
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Strange Mean-Variance plot after Voom Normalization (RNAseq)
normalizaton limma rna-seq voom written 7 months ago by grayapply2009240 • updated 7 months ago by Biostar ♦♦ 20
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Requirement of constant variance in limma-voom
voom written 8 months ago by Sam120 • updated 8 months ago by i.sudbery11k
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How to know if I should use voomWithQualityWeights() or not?
voom limma deg rna-seq written 12 months ago by pedrodcb50 • updated 12 months ago by Kevin Blighe71k
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RNA Seq data with GSEA
voom vsn rna-seq gsea written 13 months ago by pennakiza60 • updated 13 months ago by Gordon Smyth2.3k
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Design matrix for voom: with or without batch blocking?
proteomics R limma voom written 2.1 years ago by Sebastian Hesse200 • updated 13 months ago by Gordon Smyth2.3k
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limma voom problem
R next-gen limma rna-seq voom written 13 months ago by iskysinger0 • updated 13 months ago by Gordon Smyth2.3k
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How to compare two sets of results from Limma?
R limma rna-seq voom written 14 months ago by Colari1950 • updated 13 months ago by kristoffer.vittingseerup3.5k
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Interpretation of normalized counts
normalization limma rna-seq voom written 15 months ago by ika40 • updated 15 months ago by Devon Ryan98k
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logFC in topTable problem- almost identical to average expression
R bioconductor limma rna-seq voom written 15 months ago by pennakiza60 • updated 15 months ago by russhh5.5k
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Limma/edgeR or other for metagenomic (non-RNA) data?
metagenomics paired data edger voom written 16 months ago by gaio.transposon0 • updated 16 months ago by Fabio Marroni2.7k
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Voom with QuSAGE
R qusage limma rna-seq voom written 16 months ago by Colari1950 • updated 16 months ago by Gordon Smyth2.3k
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limma voom - mean variance trend
limma voom mean-variance trend limma rna-seq voom written 20 months ago by furrdinand0 • updated 20 months ago by Gordon Smyth2.3k
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differential gene set testing combining genes from multiple panels
pathway limma rna-seq voom written 23 months ago by glocke01180 • updated 23 months ago by Gordon Smyth2.3k
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 2.6 years ago by moru_all0 • updated 2.6 years ago by Mark890
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Noise Analysis for RNAseq Data
deseq2 limma rna-seq voom written 2.8 years ago by biocool201830 • updated 2.8 years ago by Friederike6.7k
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Extract genomic feature related to point from mean-variance plot in limma/voom
limma voom written 4.6 years ago by James Ashmore3.1k • updated 2.9 years ago by h.mon32k
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