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32
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354
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11 follow
1
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Tool: BioFlows - Container-enabled Bioinformatics pipeline engine
workflow next-gen pipeline tool rna-seq bioinformatics written 6 weeks ago by mfawzy.sami • 80 • updated 6 weeks ago by Istvan Albert ♦♦ 86k
0
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0
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100
views
0
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How to Rename WDL/Cromwell output folders
workflow cromwell pipeline ngs wdl written 8 weeks ago by pacman • 50
3
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1
answer
143
views
1
answer
Wes analysis - Quality control on sequenced data
exome workflow wes quality control written 8 weeks ago by AndreaSibi • 0 • updated 8 weeks ago by JC ♦ 12k
77
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1
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12k
views
65 follow
1
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Tutorial: Creating workflows with snakemake and conda
conda workflow tutorial snakemake written 2.4 years ago by finswimmer ♦ 14k • updated 10 weeks ago by psschlogl • 30
0
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0
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199
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0
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Suggestion for workflow to predict pathogenicity of SNV and INDELs
python svm pathogenicity workflow machine learning written 3 months ago by luffy • 0
0
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0
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199
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0
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Galaxy workflow concatenate
workflow galaxy multiqc fastqc written 3 months ago by avelarbio46 • 10
42
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5
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5.0k
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11 follow
5
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Makefile-Driven Workflows And Bioconductor Objects
R bioconductor pipeline workflow file written 8.0 years ago by gbayon • 160 • updated 7 months ago by Biostar ♦♦ 20
1
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0
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203
views
0
answers
How to set AWS_BATCH_JOB_ATTEMPT value when using curl to submit cromwell jobs to batch?
aws-batch workflow wdl cromwell written 8 months ago by alexandriapinto1 • 0
0
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1
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305
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1
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How do you get input files to a cromwell server
workflow cromwell widdle wdl written 8 months ago by Irsan • 7.2k • updated 8 months ago by vdauwera • 990
6
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2
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382
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5 follow
2
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Snakemake flow variantion
python workflow snakemake automatization written 9 months ago by effidotpy • 10 • updated 9 months ago by russhh ♦ 5.5k
1
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1
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1.7k
views
1
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Snakemake wildcards: Not all output, log and benchmark files of rule sortBAM_bbb contain the same wildcards.
wildcards workflow sortbam snakemake rna-seq written 12 months ago by whelenakanya • 0 • updated 12 months ago by ale_abd • 40
2
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0
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190
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0
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News: 2-day Nextflow training course in Berlin
workflow news nextflow written 12 months ago by carlopecoraro2 • 1.9k
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0
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302
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0
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Small demo bioinformatics workflows which don't require reference data?
bioinformatics workflow pipeline written 16 months ago by steve • 2.7k • updated 15 months ago by Biostar ♦♦ 20
3
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0
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442
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0
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News: Nextflow Training Course
workflow pipeline news nextflow written 15 months ago by carlopecoraro2 • 1.9k • updated 15 months ago by ATpoint ♦ 44k
2
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1
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442
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1
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CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 16 months ago by Linda • 0 • updated 15 months ago by Michael R. Crusoe • 1.8k
7
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2
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2.9k
views
10 follow
2
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Tips to build a protein network
network workflow proteomic written 3.9 years ago by benoahb • 40 • updated 17 months ago by Biostar ♦♦ 20
11
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2
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2.7k
views
2
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Pegasus Vs Taverna
workflow written 8.8 years ago by Jeremy Leipzig ♦ 19k • updated 17 months ago by Biostar ♦♦ 20
7
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1
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458
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1
answer
Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 19 months ago by mariafirulevabio • 40 • updated 19 months ago by Tom • 530
3
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1
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766
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1
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CWL join two dimensional file array output
workflow cwl scatter written 20 months ago by silverspanch • 20 • updated 20 months ago by Tom • 530
4
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1
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511
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1
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ExpressionTool failing after a scatter: How do I debug the Javascript?
workflow cwl javascript expressiontool written 22 months ago by alanh • 80
3
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0
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786
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0
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Forum: Popularity of workflow systems
workflow forum nextflow snakemake written 2.1 years ago by WouterDeCoster ♦ 45k
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503
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0
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PubSub or workflows or both?
pubsub python workflow events written 2.1 years ago by syntax • 60
30
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0
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8.5k
views
18 follow
0
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Tool: Snakemake--Python-Based Workflow Management
python workflow tool written 7.1 years ago by Sean Davis ♦ 26k • updated 2.2 years ago by carlopecoraro2 • 1.9k
7
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1
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1.1k
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1
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Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy forum written 2.3 years ago by dego999 • 0 • updated 2.3 years ago by Medhat ♦ 8.8k
1
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1
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2.8k
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1
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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 6.2 years ago by christopher.paran • 0 • updated 2.3 years ago by zx8754 ♦ 9.9k
3
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1
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1.9k
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1
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Anyone Using Jboss Drools ?
workflow written 10.5 years ago by Pierre Lindenbaum ♦ 133k • updated 2.4 years ago by _r_am ♦ 32k
0
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0
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688
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0
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 2.4 years ago by HL • 0
0
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1
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1.0k
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1
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Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws workflow snakemake reflow cfncluster written 2.4 years ago by isaacyho • 0 • updated 2.4 years ago by btsui • 290
0
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0
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991
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0
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Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto written 2.5 years ago by dark.lord • 30
5
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1
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3.8k
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1
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 8.2 years ago by Pierre Lindenbaum ♦ 133k • updated 3.3 years ago by Biostar ♦♦ 20
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