Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 59 results • page 1 of 2 • next >
42
votes
5
answers
4.9k
views
11 follow
5
answers
Makefile-Driven Workflows And Bioconductor Objects
R bioconductor pipeline workflow file written 7.5 years ago by gbayon • 160 • updated 10 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
113
views
0
answers
How to set AWS_BATCH_JOB_ATTEMPT value when using curl to submit cromwell jobs to batch?
aws-batch workflow wdl cromwell written 3 months ago by alexandriapinto1 • 0
0
votes
1
answer
130
views
1
answer
How do you get input files to a cromwell server
workflow cromwell widdle wdl written 3 months ago by Irsan • 7.2k • updated 3 months ago by vdauwera • 960
6
votes
2
answers
184
views
5 follow
2
answers
Snakemake flow variantion
python workflow snakemake automatization written 4 months ago by effidotpy • 10 • updated 4 months ago by russhh ♦ 5.5k
1
vote
1
answer
930
views
1
answer
Snakemake wildcards: Not all output, log and benchmark files of rule sortBAM_bbb contain the same wildcards.
wildcards workflow sortbam snakemake rna-seq written 6 months ago by whelenakanya • 0 • updated 6 months ago by ale_abd • 30
2
votes
0
answers
145
views
0
answers
News: 2-day Nextflow training course in Berlin
workflow news nextflow written 7 months ago by carlopecoraro2 • 1.8k
0
votes
0
answers
251
views
0
answers
Small demo bioinformatics workflows which don't require reference data?
bioinformatics workflow pipeline written 11 months ago by steve • 2.6k • updated 10 months ago by Biostar ♦♦ 20
3
votes
0
answers
297
views
0
answers
News: Nextflow Training Course
workflow pipeline news nextflow written 10 months ago by carlopecoraro2 • 1.8k • updated 10 months ago by ATpoint ♦ 36k
2
votes
1
answer
339
views
1
answer
CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 10 months ago by Linda • 0 • updated 10 months ago by Michael R. Crusoe • 1.8k
7
votes
2
answers
2.6k
views
10 follow
2
answers
Tips to build a protein network
network workflow proteomic written 3.4 years ago by benoahb • 40 • updated 12 months ago by Biostar ♦♦ 20
11
votes
2
answers
2.6k
views
2
answers
Pegasus Vs Taverna
workflow written 8.4 years ago by Jeremy Leipzig ♦ 19k • updated 12 months ago by Biostar ♦♦ 20
68
votes
1
answer
10k
views
58 follow
1
answer
Tutorial: Creating workflows with snakemake and conda
conda workflow tutorial snakemake written 23 months ago by finswimmer ♦ 13k
7
votes
1
answer
384
views
1
answer
Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 14 months ago by mariafirulevabio • 40 • updated 14 months ago by Tom • 530
3
votes
1
answer
590
views
1
answer
CWL join two dimensional file array output
workflow cwl scatter written 15 months ago by silverspanch • 20 • updated 15 months ago by Tom • 530
4
votes
1
answer
451
views
1
answer
ExpressionTool failing after a scatter: How do I debug the Javascript?
workflow cwl javascript expressiontool written 16 months ago by alanh • 80
3
votes
0
answers
731
views
0
answers
Forum: Popularity of workflow systems
workflow forum nextflow snakemake written 20 months ago by WouterDeCoster ♦ 44k
0
votes
0
answers
447
views
0
answers
PubSub or workflows or both?
pubsub python workflow events written 20 months ago by syntax • 60
30
votes
0
answers
8.3k
views
18 follow
0
answers
Tool: Snakemake--Python-Based Workflow Management
python workflow tool written 6.7 years ago by Sean Davis ♦ 26k • updated 21 months ago by carlopecoraro2 • 1.8k
7
votes
1
answer
718
views
1
answer
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy forum written 22 months ago by dego999 • 0 • updated 22 months ago by Medhat ♦ 8.7k
1
vote
1
answer
2.7k
views
1
answer
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 5.7 years ago by christopher.paran • 0 • updated 22 months ago by zx8754 ♦ 9.4k
3
votes
1
answer
1.8k
views
1
answer
Anyone Using Jboss Drools ?
workflow written 10.1 years ago by Pierre Lindenbaum ♦ 129k • updated 23 months ago by RamRS ♦ 28k
0
votes
0
answers
627
views
0
answers
CWL Error Empty Scatter
cwl workflow pipeline scatter written 23 months ago by HL • 0
0
votes
1
answer
892
views
1
answer
Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws workflow snakemake reflow cfncluster written 24 months ago by isaacyho • 0 • updated 24 months ago by btsui • 290
0
votes
0
answers
864
views
0
answers
Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto written 2.1 years ago by dark.lord • 30
5
votes
1
answer
3.6k
views
1
answer
Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 7.7 years ago by Pierre Lindenbaum ♦ 129k • updated 2.8 years ago by Biostar ♦♦ 20
21
votes
4
answers
7.4k
views
9 follow
4
answers
Free Alternatives To Pipeline Pilot
workflow open pipeline written 9.7 years ago by Flow • 1.5k • updated 3.0 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.2k
views
1
answer
Filter by multiple columns above count threshold in R
workflow rna-seq written 3.3 years ago by datascientist28 • 450 • updated 3.3 years ago by Michael Dondrup ♦ 47k
104
votes
10
answers
15k
views
30 follow
10
answers
Why Should I Use Galaxy ?
workflow galaxy written 8.1 years ago by Pierre Lindenbaum ♦ 129k
3
votes
2
answers
1.8k
views
2
answers
CWL: How to parse output of steps in workflow
workflow cwl written 3.3 years ago by jeltje.van.baren • 80
0
votes
0
answers
816
views
0
answers
From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 3.4 years ago by jiab • 30
<prev • 59 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • India, 5 minutes ago
  • Brazil, 17 minutes ago
  • United States, 18 minutes ago
  • UCLA, 19 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 653 users visited in the last hour