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Small demo bioinformatics workflows which don't require reference data?
bioinformatics workflow pipeline written 5 weeks ago by steve • 2.3k • updated 5 days ago by Biostar ♦♦ 20
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71
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News: Nextflow Training Course
workflow pipeline news nextflow written 12 days ago by carlopecoraro2 • 1.2k • updated 12 days ago by ATpoint ♦ 24k
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100
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1
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CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 27 days ago by Linda • 0 • updated 14 days ago by Michael R. Crusoe • 1.7k
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10 follow
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Tips to build a protein network
network workflow proteomic written 2.6 years ago by benoahb • 40 • updated 9 weeks ago by Biostar ♦♦ 20
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Pegasus Vs Taverna
workflow written 7.6 years ago by Jeremy Leipzig ♦ 18k • updated 9 weeks ago by Biostar ♦♦ 20
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52 follow
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Tutorial: Creating workflows with snakemake and conda
conda workflow tutorial snakemake written 13 months ago by finswimmer ♦ 12k
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228
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Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 4 months ago by mariafirulevabio • 40 • updated 4 months ago by Tom • 520
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1
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266
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1
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CWL join two dimensional file array output
workflow cwl scatter written 5 months ago by silverspanch • 10 • updated 5 months ago by Tom • 520
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1
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254
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1
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ExpressionTool failing after a scatter: How do I debug the Javascript?
workflow cwl javascript expressiontool written 6 months ago by alanh • 80
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Forum: Popularity of workflow systems
workflow forum nextflow snakemake written 10 months ago by WouterDeCoster ♦ 41k
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PubSub or workflows or both?
pubsub python workflow events written 10 months ago by syntax • 50
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18 follow
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Tool: Snakemake--Python-Based Workflow Management
python workflow tool written 5.9 years ago by Sean Davis ♦ 25k • updated 11 months ago by carlopecoraro2 • 1.2k
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Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy forum written 12 months ago by dego999 • 0 • updated 12 months ago by Medhat ♦ 8.5k
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Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 4.9 years ago by christopher.paran • 0 • updated 12 months ago by zx8754 ♦ 8.3k
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Anyone Using Jboss Drools ?
workflow written 9.3 years ago by Pierre Lindenbaum ♦ 123k • updated 13 months ago by RamRS ♦ 24k
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 13 months ago by HL • 0
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1
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578
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Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws workflow snakemake reflow cfncluster written 14 months ago by isaacyho • 0 • updated 14 months ago by btsui • 290
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Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto written 15 months ago by dark.lord • 0
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1
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 6.9 years ago by Pierre Lindenbaum ♦ 123k • updated 24 months ago by Biostar ♦♦ 20
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9 follow
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Free Alternatives To Pipeline Pilot
workflow open pipeline written 8.9 years ago by Flow • 1.5k • updated 2.2 years ago by Biostar ♦♦ 20
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840
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Filter by multiple columns above count threshold in R
workflow rna-seq written 2.5 years ago by datascientist28 • 400 • updated 2.5 years ago by Michael Dondrup ♦ 46k
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10
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14k
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30 follow
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Why Should I Use Galaxy ?
workflow galaxy written 7.2 years ago by Pierre Lindenbaum ♦ 123k
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CWL: How to parse output of steps in workflow
workflow cwl written 2.5 years ago by jeltje.van.baren • 80
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657
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From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 2.6 years ago by jiab • 30
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51 follow
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Workflow management software for pipeline development in NGS
workflow pipeline workflows pipe written 5.0 years ago by michaelberinski • 300 • updated 2.7 years ago by egafni • 30
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Query processing Illumina Expression Microarray
workflow microarray llumina written 2.8 years ago by macmath • 140
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Metagenomic shotgun sequence analysis- optimal approach
metagenomics workflow shotgun written 2.9 years ago by deni.ribicic • 0 • updated 2.9 years ago by dago • 2.5k
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Join, Subtract and Group: Compare using dataset lists
dataset list workflow compare written 3.2 years ago by khaynes • 40 • updated 3.2 years ago by geek_y ♦ 9.9k
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7 follow
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Suggest Pirna Ngs Small Rna Analysis Pipelines/Workflows
workflow written 6.0 years ago by Rm ♦ 7.9k • updated 3.4 years ago by opplatek • 30
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13 follow
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Front End, Workflow, Or Web Interface For Bioconductor
bioconductor workflow written 8.4 years ago by Jack Pincus • 50 • updated 3.5 years ago by Celton McGrath • 0
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