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5
votes
1
answer
115
views
1
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Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 11 days ago by mariafirulevabio • 20 • updated 10 days ago by Tom • 290
2
votes
1
answer
137
views
1
answer
CWL join two dimensional file array output
workflow cwl scatter written 5 weeks ago by silverspanch • 10 • updated 5 weeks ago by Tom • 290
1
vote
1
answer
162
views
1
answer
ExpressionTool failing after a scatter: How do I debug the Javascript?
workflow cwl javascript expressiontool written 12 weeks ago by alanh • 50
51
votes
0
answers
4.0k
views
46 follow
0
answers
Tutorial: Creating workflows with snakemake and conda
conda workflow tutorial snakemake written 9 months ago by finswimmer ♦ 11k
3
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0
answers
487
views
0
answers
Forum: Popularity of workflow systems
workflow forum nextflow snakemake written 6 months ago by WouterDeCoster ♦ 39k
0
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0
answers
234
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0
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PubSub or workflows or both?
pubsub python workflow events written 6 months ago by syntax • 30
28
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0
answers
7.5k
views
16 follow
0
answers
Tool: Snakemake--Python-Based Workflow Management
python workflow tool written 5.6 years ago by Sean Davis ♦ 25k • updated 7 months ago by carlopecoraro2 • 920
7
votes
1
answer
402
views
1
answer
Forum: I'm currently in my second year of my phd, I'm intrested to develop somthing for galaxy server
workflow galaxy forum written 8 months ago by dego999 • 0 • updated 8 months ago by Medhat ♦ 8.3k
1
vote
1
answer
2.5k
views
1
answer
Different results with manual MACS tool vs. workflow automated MACS tool for ChIP analysis
macs lambda workflow chip-seq forum written 4.6 years ago by christopher.paran • 0 • updated 8 months ago by zx8754 ♦ 7.5k
3
votes
1
answer
1.6k
views
1
answer
Anyone Using Jboss Drools ?
workflow written 9.0 years ago by Pierre Lindenbaum ♦ 121k • updated 9 months ago by RamRS ♦ 22k
0
votes
0
answers
357
views
0
answers
CWL Error Empty Scatter
cwl workflow pipeline scatter written 9 months ago by HL • 0
0
votes
1
answer
471
views
1
answer
Grail: reflow on AWS vs others (snakemake/cfncluster, etc)
aws workflow snakemake reflow cfncluster written 10 months ago by isaacyho • 0 • updated 10 months ago by btsui • 290
0
votes
0
answers
469
views
0
answers
Recent metatranscriptomics workflow
metatranscriptomics workflow kallisto written 11 months ago by dark.lord • 0
5
votes
1
answer
3.2k
views
1
answer
Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 6.6 years ago by Pierre Lindenbaum ♦ 121k • updated 20 months ago by Biostar ♦♦ 20
21
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4
answers
6.7k
views
9 follow
4
answers
Free Alternatives To Pipeline Pilot
workflow open pipeline written 8.5 years ago by Flow • 1.5k • updated 22 months ago by Biostar ♦♦ 20
11
votes
2
answers
2.3k
views
2
answers
Pegasus Vs Taverna
workflow written 7.2 years ago by Jeremy Leipzig ♦ 18k • updated 2.0 years ago by Biostar ♦♦ 20
3
votes
1
answer
719
views
1
answer
Filter by multiple columns above count threshold in R
workflow rna-seq written 2.2 years ago by datascientist28 • 390 • updated 2.2 years ago by Michael Dondrup ♦ 46k
104
votes
10
answers
14k
views
30 follow
10
answers
Why Should I Use Galaxy ?
workflow galaxy written 6.9 years ago by Pierre Lindenbaum ♦ 121k
3
votes
2
answers
1.3k
views
2
answers
CWL: How to parse output of steps in workflow
workflow cwl written 2.2 years ago by jeltje.van.baren • 80
7
votes
2
answers
1.9k
views
10 follow
2
answers
Tips to build a protein network
network workflow proteomic written 2.3 years ago by benoahb • 40 • updated 2.2 years ago by YaGalbi • 1.4k
0
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0
answers
592
views
0
answers
From GEO Illumina array to annotated expression table
geo annotation workflow gene expression written 2.3 years ago by jiab • 20
91
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7
answers
11k
views
47 follow
7
answers
Workflow management software for pipeline development in NGS
workflow pipeline workflows pipe written 4.7 years ago by michaelberinski • 280 • updated 2.3 years ago by egafni • 30
0
votes
0
answers
741
views
0
answers
Query processing Illumina Expression Microarray
workflow microarray llumina written 2.5 years ago by macmath • 140
0
votes
1
answer
993
views
1
answer
Metagenomic shotgun sequence analysis- optimal approach
metagenomics workflow shotgun written 2.6 years ago by deni.ribicic • 0 • updated 2.6 years ago by dago • 2.5k
1
vote
0
answers
845
views
0
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Join, Subtract and Group: Compare using dataset lists
dataset list workflow compare written 2.9 years ago by khaynes • 40 • updated 2.9 years ago by geek_y ♦ 9.7k
4
votes
4
answers
2.7k
views
7 follow
4
answers
Suggest Pirna Ngs Small Rna Analysis Pipelines/Workflows
workflow written 5.6 years ago by Rm ♦ 7.9k • updated 3.1 years ago by opplatek • 30
15
votes
9
answers
2.8k
views
13 follow
9
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Front End, Workflow, Or Web Interface For Bioconductor
bioconductor workflow written 8.0 years ago by Jack Pincus • 50 • updated 3.2 years ago by Celton McGrath • 0
4
votes
1
answer
891
views
1
answer
Can anyone suggest some good research papers to understand the complete NGS workflow?
ngs pipeline workflow written 3.3 years ago by Vijay Lakhujani ♦ 4.2k • updated 3.3 years ago by mbio.kyle • 330
3
votes
1
answer
1.4k
views
1
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Tool: NextflowWorkbench: An integrated development environment for workflows
lwt tools workflow nextflow workbench written 3.8 years ago by fac2003 • 170 • updated 3.8 years ago by Istvan Albert ♦♦ 80k
3
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0
answers
1.4k
views
0
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Job: Scientific Programmer - Ensembl Hive (Hinxton, UK)
ensembl workflow ehive job pipeline written 4.3 years ago by Matthieu - Ensembl Compara • 100 • updated 4.2 years ago by elfy.ua • 0
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