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163
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Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy hashtag hashsolo RNAseq
4 weeks ago by bioinfo ▴ 60
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449
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
4 weeks ago by bioinfo ▴ 60
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1
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449
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Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
4 weeks ago by bioinfo ▴ 60
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3
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449
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How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger. seq hashsolo rna
4 weeks ago by bioinfo ▴ 60
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235
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Comment: Comment: Do I need to specify the introns on the gtf file for cellranger?
5 weeks ago by bioinfo ▴ 60
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2
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235
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Do I need to specify the introns on the gtf file for cellranger?
fasta gtf cellranger scRNAseq
updated 5 weeks ago by 129k • written 5 weeks ago by ▴ 60
2
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1
reply
247
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Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2 rna-seq
updated 6 weeks ago by 12k • written 6 weeks ago by ▴ 60
1
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1
reply
232
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Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 11 weeks ago by ★ 4.2k • written 11 weeks ago by ▴ 60
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0
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202
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How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 12 weeks ago by 129k • written 12 weeks ago by ▴ 60
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591
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Comment: Comment: How to add gene entry to gtf file?
12 weeks ago by bioinfo ▴ 60
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591
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Comment: Comment: How to add gene entry to gtf file?
12 weeks ago by bioinfo ▴ 60
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2
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591
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Comment: Comment: How to add gene entry to gtf file?
12 weeks ago by bioinfo ▴ 60
2
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5
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591
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How to add gene entry to gtf file?
single-cell cellranger
updated 12 weeks ago by 39k • written 12 weeks ago by ▴ 60
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0
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531
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
3 months ago by bioinfo ▴ 60
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1
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531
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Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
3 months ago by bioinfo ▴ 60
2
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5
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664
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Problem with tximport and plasmodium falciparum
tximport
3 months ago by bioinfo ▴ 60
2
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0
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664
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Answer: Answer: Problem with tximport and plasmodium falciparum
3 months ago by bioinfo ▴ 60
1
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3
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885
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How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
3 months ago by bioinfo ▴ 60
1
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0
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885
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Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
3 months ago by bioinfo ▴ 60
0
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0
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1.4k
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Comment: Comment: Encountering error when loading scanpy?
3 months ago by bioinfo ▴ 60
1
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5
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531
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How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
3 months ago by bioinfo ▴ 60
3
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4
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440
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How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 3 months ago by 72k • written 3 months ago by ▴ 60
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2
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440
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Comment: Comment: How to remove a gene before making a cellranger reference?
3 months ago by bioinfo ▴ 60
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0
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253
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Comment: Comment: Do I need to merge files after downloading them from SRA?
3 months ago by bioinfo ▴ 60
1
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2
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253
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Do I need to merge files after downloading them from SRA?
rna-seq sra
3 months ago by bioinfo ▴ 60
11
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8
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1.4k
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Encountering error when loading scanpy?
scanpy single-cell scRNA-seq
3 months ago by bioinfo ▴ 60
0
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0
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885
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Comment: Comment: How to make a UMAP for single cell data and color cells by average expression of
3 months ago by bioinfo ▴ 60
0
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0
replies
664
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Comment: Comment: Problem with tximport and plasmodium falciparum
3 months ago by bioinfo ▴ 60
0
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1
reply
664
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Comment: Comment: Problem with tximport and plasmodium falciparum
3 months ago by bioinfo ▴ 60
0
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0
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224
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What is the difference between gseapy.prerank and gseapy.gsea?
gseapy gsea
3 months ago by bioinfo ▴ 60
3
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2
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320
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Do I need to correct for sequencing depth in bulk RNA seq?
kallisto RNA-seq
updated 3 months ago by 39k • written 4 months ago by ▴ 60
0
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0
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206
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How to adjust graph in scanpy?
scanpy single-cell RNA-seq
4 months ago by bioinfo ▴ 60
0
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0
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338
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How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3 scRNA-seq pseudotime Seurat R
4 months ago by bioinfo ▴ 60
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0
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547
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Comment: Comment: How to perform scRNA seq analysis?
4 months ago by bioinfo ▴ 60
2
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2
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547
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How to perform scRNA seq analysis?
single-cell pseudobulk seurat
4 months ago by bioinfo ▴ 60
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0
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869
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Comment: Comment: Issues with chromosome file in kallisto
5 months ago by bioinfo ▴ 60
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1
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869
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Comment: Comment: Issues with chromosome file in kallisto
5 months ago by bioinfo ▴ 60
0
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0
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546
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Comment: Comment: Does the bootstrap in kallisto affect the BAM files?
5 months ago by bioinfo ▴ 60
3
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2
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546
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Does the bootstrap in kallisto affect the BAM files?
RNAseq kallisto BAM
5 months ago by bioinfo ▴ 60
1
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4
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869
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Issues with chromosome file in kallisto
kallisto
updated 5 months ago by ★ 4.2k • written 5 months ago by ▴ 60
1
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2
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367
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How to run UMAP on single cell results from 2 different runs?
single-cell seurat cellranger
updated 5 months ago by 2.6k • written 5 months ago by ▴ 60
0
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1
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368
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Comment: Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
6 months ago by bioinfo ▴ 60
0
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1
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592
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Comment: Comment: Can I demultiplex run based on i5 sequence?
6 months ago by bioinfo ▴ 60
0
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1
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592
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Comment: Comment: Can I demultiplex run based on i5 sequence?
6 months ago by bioinfo ▴ 60
1
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3
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368
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How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2 kallisto RNA-seq
updated 3 months ago by 39k • written 6 months ago by ▴ 60
0
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1
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592
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Comment: Comment: Can I demultiplex run based on i5 sequence?
6 months ago by bioinfo ▴ 60
0
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1
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592
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Comment: Comment: Can I demultiplex run based on i5 sequence?
6 months ago by bioinfo ▴ 60
0
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1
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592
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Comment: Comment: Can I demultiplex run based on i5 sequence?
6 months ago by bioinfo ▴ 60
0
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10
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592
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Can I demultiplex run based on i5 sequence?
demultiplexing bcl2fastq
updated 6 months ago by 129k • written 6 months ago by ▴ 60
0
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1
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1.6k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by bioinfo ▴ 60
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