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0
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265
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Does the order of HTOs matter?
hashsolo scanpy
5 weeks ago by bioinfo ▴ 150
0
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0
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186
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Regression and scaling in scanpy
scanpy
8 weeks ago by bioinfo ▴ 150
0
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0
replies
648
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
4 months ago by bioinfo ▴ 150
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1
reply
523
views
When should I normalize and subset adata objects in scanpy?
scanpy scRNA-seq single-cell
updated 6 months ago by 4.8k • written 6 months ago by ▴ 150
0
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1
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402
views
How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 6 months ago by 4.8k • written 6 months ago by ▴ 150
0
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0
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239
views
How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
7 months ago by bioinfo ▴ 150
2
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1
reply
387
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 7 months ago by ▴ 940 • written 7 months ago by ▴ 150
0
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0
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398
views
Comment: Comment: How can I import an unindexed human gtf file in IGV?
7 months ago by bioinfo ▴ 150
0
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2
replies
398
views
How can I import an unindexed human gtf file in IGV?
igv
7 months ago by bioinfo ▴ 150
0
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0
replies
825
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
8 months ago by bioinfo ▴ 150
0
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1
reply
825
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
8 months ago by bioinfo ▴ 150
0
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1
reply
825
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
8 months ago by bioinfo ▴ 150
0
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6
replies
825
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
8 months ago by bioinfo ▴ 150
0
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1
reply
569
views
Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
8 months ago by bioinfo ▴ 150
1
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3
replies
569
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 8 months ago by 149k • written 8 months ago by ▴ 150
0
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0
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648
views
Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
8 months ago by bioinfo ▴ 150
2
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3
replies
648
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
4 months ago by bioinfo ▴ 150
0
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1
reply
1.4k
views
Comment: Comment: How should I make kallisto indexes?
9 months ago by bioinfo ▴ 150
1
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5
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1.4k
views
How should I make kallisto indexes?
kallisto
updated 9 months ago by ★ 7.2k • written 9 months ago by ▴ 150
0
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0
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534
views
Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
9 months ago by bioinfo ▴ 150
0
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0
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680
views
Comment: Comment: How to row normalize a matrixplot?
9 months ago by bioinfo ▴ 150
1
vote
2
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534
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
9 months ago by bioinfo ▴ 150
2
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2
replies
680
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
9 months ago by bioinfo ▴ 150
0
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1
reply
872
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 10 months ago by 44k • written 10 months ago by ▴ 150
0
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0
replies
685
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
10 months ago by bioinfo ▴ 150
0
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1
reply
685
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
10 months ago by bioinfo ▴ 150
0
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5
replies
685
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 10 months ago by 44k • written 10 months ago by ▴ 150
0
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1
reply
1.1k
views
Comment: Comment: How does kallisto handle multi mapped reads?
11 months ago by bioinfo ▴ 150
0
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1
reply
1.1k
views
Comment: Comment: How does kallisto handle multi mapped reads?
11 months ago by bioinfo ▴ 150
3
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7
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1.1k
views
How does kallisto handle multi mapped reads?
kallisto
updated 11 months ago by ★ 7.2k • written 11 months ago by ▴ 150
0
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2
replies
745
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 9 months ago by • 0 • written 11 months ago by ▴ 150
0
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0
replies
498
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
14 months ago by bioinfo ▴ 150
4
votes
2
replies
1.0k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 14 months ago by 21k • written 14 months ago by ▴ 150
0
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1
reply
1.5k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
15 months ago by bioinfo ▴ 150
0
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1
reply
1.5k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
15 months ago by bioinfo ▴ 150
0
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1
reply
1.5k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
15 months ago by bioinfo ▴ 150
3
votes
7
replies
1.5k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 10 months ago by 44k • written 15 months ago by ▴ 150
0
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0
replies
1.1k
views
Comment: Comment: Why am I getting different results with kallisto?
15 months ago by bioinfo ▴ 150
0
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1
reply
1.1k
views
Comment: Comment: Why am I getting different results with kallisto?
15 months ago by bioinfo ▴ 150
0
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1
reply
1.1k
views
Comment: Comment: Why am I getting different results with kallisto?
15 months ago by bioinfo ▴ 150
3
votes
4
replies
1.1k
views
Why am I getting different results with kallisto?
kallisto
15 months ago by bioinfo ▴ 150
0
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1
reply
819
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
15 months ago by bioinfo ▴ 150
2
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3
replies
819
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 15 months ago by 149k • written 15 months ago by ▴ 150
0
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0
replies
539
views
How to convert dataframe properly to anndata?
single-cell python anndata
updated 10 months ago by 44k • written 15 months ago by ▴ 150
0
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0
replies
502
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 10 months ago by 44k • written 15 months ago by ▴ 150
0
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0
replies
466
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 10 months ago by 44k • written 15 months ago by ▴ 150
0
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0
replies
1.2k
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
16 months ago by bioinfo ▴ 150
0
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1
reply
1.2k
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
16 months ago by bioinfo ▴ 150
0
votes
2
replies
2.7k
views
Removing constant/zero columns for PCA?
R pca
updated 16 months ago by ★ 28k • written 16 months ago by ▴ 150
1
vote
4
replies
1.2k
views
How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
16 months ago by bioinfo ▴ 150
154 results • Page 1 of 4
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