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1
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5
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788
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How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
7 months ago by bioinfo ▴ 110
3
votes
4
replies
573
views
How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 7 months ago by 77k • written 7 months ago by ▴ 110
0
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2
replies
573
views
Comment: Comment: How to remove a gene before making a cellranger reference?
7 months ago by bioinfo ▴ 110
0
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0
replies
340
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Comment: Comment: Do I need to merge files after downloading them from SRA?
7 months ago by bioinfo ▴ 110
1
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2
replies
340
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Do I need to merge files after downloading them from SRA?
rna-seq sra
7 months ago by bioinfo ▴ 110
13
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8
replies
2.5k
views
Encountering error when loading scanpy?
scanpy single-cell scRNA-seq
7 months ago by bioinfo ▴ 110
0
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0
replies
1.3k
views
Comment: Comment: How to make a UMAP for single cell data and color cells by average expression of
7 months ago by bioinfo ▴ 110
0
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0
replies
848
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Comment: Comment: Problem with tximport and plasmodium falciparum
7 months ago by bioinfo ▴ 110
0
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1
reply
848
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Comment: Comment: Problem with tximport and plasmodium falciparum
7 months ago by bioinfo ▴ 110
1
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0
replies
346
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy gsea
7 months ago by bioinfo ▴ 110
3
votes
2
replies
403
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto RNA-seq
updated 7 months ago by 40k • written 8 months ago by ▴ 110
0
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0
replies
341
views
How to adjust graph in scanpy?
scanpy single-cell RNA-seq
8 months ago by bioinfo ▴ 110
0
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0
replies
470
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3 scRNA-seq pseudotime Seurat R
8 months ago by bioinfo ▴ 110
0
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0
replies
739
views
Comment: Comment: How to perform scRNA seq analysis?
8 months ago by bioinfo ▴ 110
2
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2
replies
739
views
How to perform scRNA seq analysis?
single-cell pseudobulk seurat
8 months ago by bioinfo ▴ 110
0
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0
replies
1.1k
views
Comment: Comment: Issues with chromosome file in kallisto
9 months ago by bioinfo ▴ 110
0
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1
reply
1.1k
views
Comment: Comment: Issues with chromosome file in kallisto
9 months ago by bioinfo ▴ 110
0
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0
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632
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Comment: Comment: Does the bootstrap in kallisto affect the BAM files?
9 months ago by bioinfo ▴ 110
3
votes
2
replies
632
views
Does the bootstrap in kallisto affect the BAM files?
RNAseq kallisto BAM
9 months ago by bioinfo ▴ 110
1
vote
4
replies
1.1k
views
Issues with chromosome file in kallisto
kallisto
updated 9 months ago by ★ 4.7k • written 9 months ago by ▴ 110
1
vote
2
replies
530
views
How to run UMAP on single cell results from 2 different runs?
single-cell seurat cellranger
updated 9 months ago by 3.4k • written 9 months ago by ▴ 110
0
votes
1
reply
529
views
Comment: Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
10 months ago by bioinfo ▴ 110
0
votes
1
reply
871
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
10 months ago by bioinfo ▴ 110
0
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1
reply
871
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
10 months ago by bioinfo ▴ 110
1
vote
3
replies
529
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2 kallisto RNA-seq
updated 7 months ago by 40k • written 10 months ago by ▴ 110
0
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1
reply
871
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
10 months ago by bioinfo ▴ 110
0
votes
1
reply
871
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
10 months ago by bioinfo ▴ 110
0
votes
1
reply
871
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
10 months ago by bioinfo ▴ 110
0
votes
10
replies
871
views
Can I demultiplex run based on i5 sequence?
demultiplexing bcl2fastq
updated 10 months ago by 134k • written 10 months ago by ▴ 110
0
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1
reply
2.2k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
11 months ago by bioinfo ▴ 110
3
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13
replies
2.2k
views
How to choose parameters for kallisto single end mode?
kallisto RNA-seq
updated 4 months ago by 98k • written 11 months ago by ▴ 110
0
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0
replies
2.2k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
11 months ago by bioinfo ▴ 110
7
votes
3
replies
1.3k
views
Should I merge my technical replicates for bulk RNA seq?
RNA-seq DESeq2
updated 7 months ago by 40k • written 11 months ago by ▴ 110
4
votes
4
replies
681
views
Can I perform DE analysis with Seurat if I only have one sample per condition?
single RNA Seq cell seurat
updated 11 months ago by 3.4k • written 11 months ago by ▴ 110
0
votes
0
replies
256
views
How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene ensembl tximport kallisto
12 months ago by bioinfo ▴ 110
0
votes
0
replies
999
views
Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
13 months ago by bioinfo ▴ 110
0
votes
0
replies
999
views
Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
13 months ago by bioinfo ▴ 110
4
votes
4
replies
999
views
How can I confirm that I installed bcl2fastq correctly?
bcl2fastq linux ubuntu
13 months ago by bioinfo ▴ 110
3
votes
2
replies
509
views
Why do I get a positive gene expression with qPCR for one my genes but in with when doing bulk RNA seq I get a count of 0?
gene qpcr kallisto seq expression rna
updated 14 months ago by ★ 4.7k • written 14 months ago by ▴ 110
1
vote
3
replies
602
views
How to filter .fa file by gene_biotype
rna-seq kallisto
updated 15 months ago by 40k • written 16 months ago by ▴ 110
0
votes
1
reply
891
views
Comment: Comment: How to create kallisto index that does not include ribosomal genes
16 months ago by bioinfo ▴ 110
0
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1
reply
891
views
Comment: Comment: How to create kallisto index that does not include ribosomal genes
16 months ago by bioinfo ▴ 110
0
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7
replies
891
views
6 follow
How to create kallisto index that does not include ribosomal genes
enseml kallisto RNA-seq
updated 9 months ago by 40k • written 16 months ago by ▴ 110
0
votes
0
replies
303
views
Replicates in sc-RNA seq have different amount of cells-Can I still use them for the analysis?
Cell seurat Single
updated 16 months ago by 77k • written 16 months ago by ▴ 110
0
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2
replies
845
views
Comment: Comment: Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
17 months ago by bioinfo ▴ 110
2
votes
4
replies
845
views
Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
kallisto
updated 17 months ago by 40k • written 17 months ago by ▴ 110
0
votes
1
reply
820
views
Comment: Comment: Ensembl version for mapping and annotating genes
17 months ago by bioinfo ▴ 110
2
votes
3
replies
820
views
Ensembl version for mapping and annotating genes
rna-seq kallisto
updated 15 months ago by 40k • written 17 months ago by ▴ 110
6
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2
replies
472
views
Ensembl version
ensembl kallisto
updated 9 months ago by 40k • written 17 months ago by ▴ 110
2
votes
2
replies
1.9k
views
Cellranger command for RNA velocity
cellranger Cell velocity RNA Single
updated 20 months ago by 8.8k • written 20 months ago by ▴ 110
104 results • Page 2 of 3
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