Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
0
replies
962
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
1
vote
5
replies
962
views
Questions about per base sequence quality and GC content.
fastqc fastq seq RNA
8 months ago by bioinfo ▴ 150
0
votes
0
replies
727
views
Comment: Comment: How to assign gene names to ensembl IDs if species not in Biomart
8 months ago by bioinfo ▴ 150
3
votes
3
replies
727
views
How to assign gene names to ensembl IDs if species not in Biomart
biomart ensembl
8 months ago by bioinfo ▴ 150
0
votes
2
replies
1.5k
views
Comment: Comment: Why do I need to sort and index gtf file for IGV?
9 months ago by bioinfo ▴ 150
0
votes
4
replies
1.5k
views
Why do I need to sort and index gtf file for IGV?
igv
updated 9 months ago by 82k • written 9 months ago by ▴ 150
0
votes
0
replies
738
views
Comment: Comment: Where can I find the --chromosomes file for kallisto?
9 months ago by bioinfo ▴ 150
3
votes
3
replies
738
views
Where can I find the --chromosomes file for kallisto?
kallisto
updated 9 months ago by 142k • written 9 months ago by ▴ 150
3
votes
2
replies
598
views
How to figure out adapter sequences in RNA seq?
adapters rna-seq
updated 10 months ago by ▴ 900 • written 10 months ago by ▴ 150
1
vote
0
replies
406
views
How does kallisto genomebam handle multi mapping reads?
kallisto
updated 11 months ago by 43k • written 11 months ago by ▴ 150
0
votes
0
replies
794
views
Comment: Comment: Does adding reads cause batch effects?
11 months ago by bioinfo ▴ 150
0
votes
1
reply
794
views
Comment: Comment: Does adding reads cause batch effects?
11 months ago by bioinfo ▴ 150
4
votes
5
replies
794
views
Does adding reads cause batch effects?
kallisto RNAseq
11 months ago by bioinfo ▴ 150
0
votes
0
replies
505
views
Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy hashtag hashsolo RNAseq
12 months ago by bioinfo ▴ 150
1
vote
0
replies
1.3k
views
Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
12 months ago by bioinfo ▴ 150
0
votes
1
reply
1.3k
views
Comment: Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
12 months ago by bioinfo ▴ 150
1
vote
3
replies
1.3k
views
How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger. seq hashsolo rna
12 months ago by bioinfo ▴ 150
0
votes
0
replies
637
views
Comment: Comment: Do I need to specify the introns on the gtf file for cellranger?
12 months ago by bioinfo ▴ 150
0
votes
2
replies
637
views
Do I need to specify the introns on the gtf file for cellranger?
fasta gtf cellranger scRNAseq
updated 12 months ago by 142k • written 12 months ago by ▴ 150
2
votes
1
reply
627
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2 rna-seq
updated 12 months ago by 13k • written 12 months ago by ▴ 150
1
vote
1
reply
578
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 14 months ago by ★ 6.0k • written 14 months ago by ▴ 150
0
votes
0
replies
369
views
How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 14 months ago by 142k • written 14 months ago by ▴ 150
0
votes
0
replies
1.4k
views
Comment: Comment: How to add gene entry to gtf file?
14 months ago by bioinfo ▴ 150
0
votes
0
replies
1.4k
views
Comment: Comment: How to add gene entry to gtf file?
14 months ago by bioinfo ▴ 150
0
votes
2
replies
1.4k
views
Comment: Comment: How to add gene entry to gtf file?
14 months ago by bioinfo ▴ 150
2
votes
5
replies
1.4k
views
How to add gene entry to gtf file?
single-cell cellranger
updated 14 months ago by 43k • written 14 months ago by ▴ 150
0
votes
0
replies
1.2k
views
Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
14 months ago by bioinfo ▴ 150
0
votes
1
reply
1.2k
views
Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
14 months ago by bioinfo ▴ 150
2
votes
5
replies
1.1k
views
Problem with tximport and plasmodium falciparum
tximport
14 months ago by bioinfo ▴ 150
2
votes
0
replies
1.1k
views
Answer: Answer: Problem with tximport and plasmodium falciparum
14 months ago by bioinfo ▴ 150
1
vote
3
replies
2.1k
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
14 months ago by bioinfo ▴ 150
1
vote
0
replies
2.1k
views
Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
14 months ago by bioinfo ▴ 150
0
votes
0
replies
4.8k
views
Comment: Comment: Encountering error when loading scanpy?
14 months ago by bioinfo ▴ 150
1
vote
5
replies
1.2k
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
14 months ago by bioinfo ▴ 150
3
votes
4
replies
827
views
How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 14 months ago by 82k • written 14 months ago by ▴ 150
0
votes
2
replies
827
views
Comment: Comment: How to remove a gene before making a cellranger reference?
14 months ago by bioinfo ▴ 150
0
votes
0
replies
496
views
Comment: Comment: Do I need to merge files after downloading them from SRA?
14 months ago by bioinfo ▴ 150
1
vote
2
replies
496
views
Do I need to merge files after downloading them from SRA?
rna-seq sra
14 months ago by bioinfo ▴ 150
14
votes
8
replies
4.8k
views
Encountering error when loading scanpy?
scanpy single-cell scRNA-seq
14 months ago by bioinfo ▴ 150
0
votes
0
replies
2.1k
views
Comment: Comment: How to make a UMAP for single cell data and color cells by average expression of
14 months ago by bioinfo ▴ 150
0
votes
0
replies
1.1k
views
Comment: Comment: Problem with tximport and plasmodium falciparum
14 months ago by bioinfo ▴ 150
0
votes
1
reply
1.1k
views
Comment: Comment: Problem with tximport and plasmodium falciparum
15 months ago by bioinfo ▴ 150
1
vote
0
replies
449
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy gsea
15 months ago by bioinfo ▴ 150
3
votes
2
replies
566
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto RNA-seq
updated 14 months ago by 43k • written 15 months ago by ▴ 150
0
votes
0
replies
499
views
How to adjust graph in scanpy?
scanpy single-cell RNA-seq
15 months ago by bioinfo ▴ 150
0
votes
0
replies
666
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3 scRNA-seq pseudotime Seurat R
15 months ago by bioinfo ▴ 150
0
votes
0
replies
1.1k
views
Comment: Comment: How to perform scRNA seq analysis?
16 months ago by bioinfo ▴ 150
2
votes
2
replies
1.1k
views
How to perform scRNA seq analysis?
single-cell pseudobulk seurat
16 months ago by bioinfo ▴ 150
0
votes
0
replies
1.4k
views
Comment: Comment: Issues with chromosome file in kallisto
16 months ago by bioinfo ▴ 150
0
votes
1
reply
1.4k
views
Comment: Comment: Issues with chromosome file in kallisto
16 months ago by bioinfo ▴ 150
137 results • Page 2 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6