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133
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How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
7 days ago by bioinfo ▴ 140
4
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2
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407
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 19 days ago by 18k • written 21 days ago by ▴ 140
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1
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636
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
22 days ago by bioinfo ▴ 140
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1
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636
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
24 days ago by bioinfo ▴ 140
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1
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636
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
27 days ago by bioinfo ▴ 140
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7
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636
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How much adapters is it ok to keep in my samples after RNA seq?
rna adapters illumina seq
updated 22 days ago by 136k • written 27 days ago by ▴ 140
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0
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410
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Comment: Comment: Why am I getting different results with kallisto?
27 days ago by bioinfo ▴ 140
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1
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410
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Comment: Comment: Why am I getting different results with kallisto?
27 days ago by bioinfo ▴ 140
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1
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410
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Comment: Comment: Why am I getting different results with kallisto?
27 days ago by bioinfo ▴ 140
3
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4
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410
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Why am I getting different results with kallisto?
kallisto
27 days ago by bioinfo ▴ 140
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1
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281
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Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
4 weeks ago by bioinfo ▴ 140
2
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3
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281
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Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 4 weeks ago by 136k • written 4 weeks ago by ▴ 140
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0
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172
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How to convert dataframe properly to anndata?
anndata python cell single
6 weeks ago by bioinfo ▴ 140
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0
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170
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How to import filtered_tf_bc_matrix and add it to my anndata object?
anndata python atac anndataset
6 weeks ago by bioinfo ▴ 140
0
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0
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186
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How to subsample ATAC fragment file?
single cell RNA atac seq
6 weeks ago by bioinfo ▴ 140
0
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0
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485
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 weeks ago by bioinfo ▴ 140
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1
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485
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Comment: Comment: How to assign gene names after kallisto when I add GFP?
8 weeks ago by bioinfo ▴ 140
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2
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392
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Removing constant/zero columns for PCA?
R pca
updated 8 weeks ago by ★ 25k • written 8 weeks ago by ▴ 140
1
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4
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485
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How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
7 weeks ago by bioinfo ▴ 140
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0
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779
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 weeks ago by bioinfo ▴ 140
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0
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779
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 weeks ago by bioinfo ▴ 140
1
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8
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779
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How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
10 weeks ago by bioinfo ▴ 140
0
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1
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779
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 weeks ago by bioinfo ▴ 140
0
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1
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779
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Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 weeks ago by bioinfo ▴ 140
0
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0
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465
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Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
3 months ago by bioinfo ▴ 140
5
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2
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465
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How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
3 months ago by bioinfo ▴ 140
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0
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646
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
3 months ago by bioinfo ▴ 140
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1
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646
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
3 months ago by bioinfo ▴ 140
0
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0
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646
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Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
3 months ago by bioinfo ▴ 140
0
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1
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646
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
3 months ago by bioinfo ▴ 140
0
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8
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646
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Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
3 months ago by bioinfo ▴ 140
1
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1
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354
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Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 3 months ago by 136k • written 3 months ago by ▴ 140
0
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0
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558
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Comment: Comment: Questions about per base sequence quality and GC content.
3 months ago by bioinfo ▴ 140
0
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1
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558
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Comment: Comment: Questions about per base sequence quality and GC content.
3 months ago by bioinfo ▴ 140
0
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0
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499
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Comment: Comment: How to choose threshold for scrublet?
3 months ago by bioinfo ▴ 140
0
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2
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499
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How to choose threshold for scrublet?
rna-seq scrublet
3 months ago by bioinfo ▴ 140
0
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0
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558
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Comment: Comment: Questions about per base sequence quality and GC content.
3 months ago by bioinfo ▴ 140
0
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5
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558
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Questions about per base sequence quality and GC content.
fastqc fastq seq RNA
3 months ago by bioinfo ▴ 140
0
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0
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497
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Comment: Comment: How to assign gene names to ensembl IDs if species not in Biomart
3 months ago by bioinfo ▴ 140
3
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3
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497
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How to assign gene names to ensembl IDs if species not in Biomart
biomart ensembl
3 months ago by bioinfo ▴ 140
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2
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623
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Comment: Comment: Why do I need to sort and index gtf file for IGV?
4 months ago by bioinfo ▴ 140
0
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4
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623
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Why do I need to sort and index gtf file for IGV?
igv
updated 4 months ago by 78k • written 4 months ago by ▴ 140
0
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0
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556
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Comment: Comment: Where can I find the --chromosomes file for kallisto?
4 months ago by bioinfo ▴ 140
3
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3
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556
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Where can I find the --chromosomes file for kallisto?
kallisto
updated 4 months ago by 136k • written 4 months ago by ▴ 140
3
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2
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438
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How to figure out adapter sequences in RNA seq?
adapters rna-seq
updated 5 months ago by ▴ 880 • written 5 months ago by ▴ 140
1
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0
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313
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How does kallisto genomebam handle multi mapping reads?
kallisto
updated 6 months ago by 41k • written 6 months ago by ▴ 140
0
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0
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618
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Comment: Comment: Does adding reads cause batch effects?
6 months ago by bioinfo ▴ 140
0
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1
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618
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Comment: Comment: Does adding reads cause batch effects?
6 months ago by bioinfo ▴ 140
4
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5
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618
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Does adding reads cause batch effects?
kallisto RNAseq
6 months ago by bioinfo ▴ 140
0
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0
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347
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Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy hashtag hashsolo RNAseq
7 months ago by bioinfo ▴ 140
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