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How to choose cells that co-express several genes with scanpy?
scanpy scRNA-seq single-cell
updated 3 days ago by 4.1k • written 3 days ago by ▴ 150
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0
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117
views
How to run trajectory analysis with only one cell type using palantir?
palantir scanpy
16 days ago by bioinfo ▴ 150
2
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1
reply
177
views
Do I need to remove doublets after before or after running hashsolo?
hashsolo scanpy scrublet
updated 18 days ago by ▴ 880 • written 19 days ago by ▴ 150
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206
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Comment: Comment: How can I import an unindexed human gtf file in IGV?
23 days ago by bioinfo ▴ 150
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2
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206
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How can I import an unindexed human gtf file in IGV?
igv
23 days ago by bioinfo ▴ 150
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0
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449
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 weeks ago by bioinfo ▴ 150
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1
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449
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Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 weeks ago by bioinfo ▴ 150
0
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1
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449
views
Comment: Comment: Why am I getting such a big difference in alignment rates in kallisto?
6 weeks ago by bioinfo ▴ 150
0
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6
replies
449
views
Why am I getting such a big difference in alignment rates in kallisto?
kallisto ensembl
6 weeks ago by bioinfo ▴ 150
0
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1
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307
views
Comment: Comment: Where are the illumina adapters on Trimmomatic take from?
9 weeks ago by bioinfo ▴ 150
1
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3
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307
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Where are the illumina adapters on Trimmomatic take from?
rna-seq trimmomatic
updated 9 weeks ago by 144k • written 9 weeks ago by ▴ 150
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0
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367
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Comment: Comment: Why does assigning genes with biomart give me different values than using a tran
10 weeks ago by bioinfo ▴ 150
2
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2
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367
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Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart RNAseq kallisto
10 weeks ago by bioinfo ▴ 150
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1
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707
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Comment: Comment: How should I make kallisto indexes?
12 weeks ago by bioinfo ▴ 150
1
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5
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707
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How should I make kallisto indexes?
kallisto
updated 12 weeks ago by ★ 6.4k • written 3 months ago by ▴ 150
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375
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
3 months ago by bioinfo ▴ 150
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0
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422
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Comment: Comment: How to row normalize a matrixplot?
3 months ago by bioinfo ▴ 150
1
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2
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375
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
3 months ago by bioinfo ▴ 150
2
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2
replies
422
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
3 months ago by bioinfo ▴ 150
0
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1
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419
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 3 months ago by 44k • written 3 months ago by ▴ 150
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0
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419
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
3 months ago by bioinfo ▴ 150
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1
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419
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
3 months ago by bioinfo ▴ 150
0
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5
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419
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 3 months ago by 44k • written 3 months ago by ▴ 150
0
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1
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700
views
Comment: Comment: How does kallisto handle multi mapped reads?
5 months ago by bioinfo ▴ 150
0
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1
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700
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Comment: Comment: How does kallisto handle multi mapped reads?
5 months ago by bioinfo ▴ 150
3
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7
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700
views
How does kallisto handle multi mapped reads?
kallisto
updated 5 months ago by ★ 6.4k • written 5 months ago by ▴ 150
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2
replies
505
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 3 months ago by • 0 • written 5 months ago by ▴ 150
0
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0
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350
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
7 months ago by bioinfo ▴ 150
4
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2
replies
775
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 8 months ago by 20k • written 8 months ago by ▴ 150
0
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1
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1.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
8 months ago by bioinfo ▴ 150
0
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1
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1.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
8 months ago by bioinfo ▴ 150
0
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1
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1.1k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
8 months ago by bioinfo ▴ 150
3
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7
replies
1.1k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 3 months ago by 44k • written 8 months ago by ▴ 150
0
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0
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802
views
Comment: Comment: Why am I getting different results with kallisto?
8 months ago by bioinfo ▴ 150
0
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1
reply
802
views
Comment: Comment: Why am I getting different results with kallisto?
8 months ago by bioinfo ▴ 150
0
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1
reply
802
views
Comment: Comment: Why am I getting different results with kallisto?
8 months ago by bioinfo ▴ 150
3
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4
replies
802
views
Why am I getting different results with kallisto?
kallisto
8 months ago by bioinfo ▴ 150
0
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1
reply
603
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
8 months ago by bioinfo ▴ 150
2
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3
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603
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 8 months ago by 144k • written 8 months ago by ▴ 150
0
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0
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402
views
How to convert dataframe properly to anndata?
single-cell python anndata
updated 3 months ago by 44k • written 9 months ago by ▴ 150
0
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0
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384
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 3 months ago by 44k • written 9 months ago by ▴ 150
0
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0
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365
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 3 months ago by 44k • written 9 months ago by ▴ 150
0
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0
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808
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
9 months ago by bioinfo ▴ 150
0
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1
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808
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
9 months ago by bioinfo ▴ 150
0
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2
replies
1.8k
views
Removing constant/zero columns for PCA?
R pca
updated 9 months ago by ★ 27k • written 9 months ago by ▴ 150
1
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4
replies
808
views
How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
9 months ago by bioinfo ▴ 150
0
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0
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2.6k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 months ago by bioinfo ▴ 150
0
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0
replies
2.6k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 months ago by bioinfo ▴ 150
1
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8
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2.6k
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
10 months ago by bioinfo ▴ 150
0
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1
reply
2.6k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
10 months ago by bioinfo ▴ 150
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