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9
votes
6
replies
3.1k
views
hypergeometric distribution for proximal gene enrichment
ChIP-Seq
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 600
0
votes
0
replies
3.1k
views
Comment: Comment: hypergeometric distribution for proximal gene enrichment
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 600
0
votes
0
replies
2.5k
views
Peak calling for TF and histone modification
ChIP-Seq
updated 2.0 years ago by 44k • written 9.3 years ago by ▴ 600
7
votes
5
replies
5.9k
views
view of a circular viral genome and its annotation
genome
updated 22 months ago by 44k • written 9.3 years ago by ▴ 600
5
votes
2
replies
3.8k
views
understanding of dbSNP info on MAF, Alleles and HGVS Names
SNP
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 600
0
votes
1
reply
3.5k
views
Comment: Comment: SNPs, genotypes, HWE in GWAS,
updated 22 months ago by 44k • written 9.4 years ago by ▴ 600
2
votes
3
replies
3.5k
views
SNPs, genotypes, HWE in GWAS,
snp
updated 22 months ago by 44k • written 9.4 years ago by ▴ 600
1
vote
1
reply
1.6k
views
ncbi shows another chromosome of a SNP
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
4
votes
1
reply
5.4k
views
R: IRanges, extract seqnames values
R
updated 3.0 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
2
replies
1.9k
views
identify TFBS for given set of SNPs
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
2.1k
views
unite histone sites, DNAse, Chip-seq data from different cell types.
ChIP-Seq SNP rna-seq
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
3.3k
views
Comment: Comment: installing blat for homer on os x
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
1
reply
2.8k
views
gviz: plotting two kind of axes one horizontal and one vertical
R gviz
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
3
replies
3.8k
views
GVIZ plotTracks plots dense features under each other
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
0
replies
3.8k
views
Answer: Answer: GVIZ plotTracks plots dense features under each other
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
17
votes
3
replies
13k
views
biomart gene coordinates do not correspond to genome browser
ensembl R biomart
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
4.4k
views
Comment: Comment: histone mark data from roadmap epigenomics
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
13
votes
7
replies
4.4k
views
histone mark data from roadmap epigenomics
R ChIP-Seq
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
4.4k
views
Comment: Comment: histone mark data from roadmap epigenomics
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
0
replies
13k
views
Comment: C: biomart gene coordinates do not correspond to genome browser
9.6 years ago by tonja.r ▴ 600
1
vote
1
reply
3.0k
views
SNPs in DNase hypersensitive and histone marks sites
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
2
votes
0
replies
1.5k
views
tool: changes in binding affinities caused by SNP
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
2.3k
views
the location of TFBS in genome / binding affinities caused by SNP
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
0
replies
3.6k
views
Comment: C: BiomaRT, retrieve exon positions but filter to chrosomal region
9.6 years ago by tonja.r ▴ 600
2
votes
2
replies
3.6k
views
BiomaRT, retrieve exon positions but filter to chrosomal region
R
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
5
votes
1
reply
2.1k
views
retrieve with tabix only fields of interest
SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
1
reply
4.5k
views
reference alle is a major allele or a non-disease allele in VEP
snp
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 600
0
votes
1
reply
3.0k
views
Comment: C: assign each SNP a strand information
9.6 years ago by tonja.r ▴ 600
0
votes
1
reply
3.0k
views
Comment: C: assign each SNP a strand information
9.6 years ago by tonja.r ▴ 600
5
votes
5
replies
3.0k
views
assign each SNP a strand information
SNP
updated 2.5 years ago by 44k • written 9.6 years ago by ▴ 600
1
vote
0
replies
5.8k
views
ANNOVAR vs VEP
SNP
updated 2.5 years ago by 44k • written 9.6 years ago by ▴ 600
2
votes
1
reply
9.1k
views
chi-squared test for hardy-weinberg equilibrium in r
R
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 600
2
votes
1
reply
1.6k
views
Comment: Comment: Starting at the variant of interest, the region is extended out ±0.1cM
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 600
7
votes
3
replies
1.6k
views
Starting at the variant of interest, the region is extended out ±0.1cM
SNP
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 600
2
votes
4
replies
2.3k
views
epigenetic database for immuncells
ChIP-Seq
updated 2.1 years ago by 9.0k • written 9.7 years ago by ▴ 600
7
votes
3
replies
5.2k
views
paired end sequencing, sequence distance
next-gen
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 600
2
votes
1
reply
5.3k
views
genotype calling,definition of false negative and false positive
genotype
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 600
3
votes
1
reply
2.7k
views
exome sequencing, target capture
sequencing snp exome
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 600
0
votes
1
reply
2.2k
views
Comment: C: GATK Realignment, comparison of the variants between realigned reads and not rea
10.3 years ago by tonja.r ▴ 600
3
votes
3
replies
2.2k
views
GATK Realignment, comparison of the variants between realigned reads and not realigned reads.
GATK
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 600
0
votes
1
reply
1.9k
views
Normalization of oligonucleotide arrays /bolstad
normalization microarray
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 600
4
votes
1
reply
3.4k
views
Quantile normalization of microarray
quantile-normalization microarray
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 600
2
votes
1
reply
2.0k
views
Dataset In The Paper Of Irizarry 2003
dataset
10.6 years ago by tonja.r ▴ 600
0
votes
1
reply
1.9k
views
Affymetrix, Scaling Method With Baseline Array
affymetrix
updated 10.6 years ago by 11k • written 10.6 years ago by ▴ 600
3
votes
3
replies
2.3k
views
Affymetrix Normalization And Non-Linear Relationships
affymetrix normalization
updated 10.6 years ago by 104k • written 10.6 years ago by ▴ 600
0
votes
1
reply
2.0k
views
Comment: C: Microarrays, Greater Differentiation Between Chips Is In The Tails
10.6 years ago by tonja.r ▴ 600
0
votes
1
reply
2.0k
views
Comment: C: Microarrays, Greater Differentiation Between Chips Is In The Tails
10.6 years ago by tonja.r ▴ 600
0
votes
5
replies
2.0k
views
Microarrays, Greater Differentiation Between Chips Is In The Tails
updated 10.6 years ago by 5.1k • written 10.6 years ago by ▴ 600
148 results • Page 3 of 3
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