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questions
0
votes
0
replies
115
views
Comparison between Bracken outputs
Bracken
Kraken
Taxonomy
23 days ago by
SushiRoll
▴ 120
0
votes
3
replies
531
views
Problems running Roary
pangenome
Roary
updated 3 months ago by
Ram
43k • written 3 months ago by
SushiRoll
▴ 120
2
votes
2
replies
384
views
Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq
HTSeq
6 months ago by
SushiRoll
▴ 120
4
votes
4
replies
869
views
Kraken2 is falsely assigning Klebsiella
taxonomy
Kraken2
7 months ago by
SushiRoll
▴ 120
2
votes
2
replies
614
views
Kraken2 recovering only classified reads
Kraken2
taxonomy
classification
7 months ago by
SushiRoll
▴ 120
0
votes
3
replies
804
views
How to determine number of SNPs called?
Snippy
SNP
8 months ago by
SushiRoll
▴ 120
1
vote
4
replies
714
views
Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq
metatranscriptomics
11 months ago by
SushiRoll
▴ 120
0
votes
2
replies
567
views
Is there a SILVA database version with only prokaryotes?
taxonomy
SILVA
16S
12 months ago by
SushiRoll
▴ 120
0
votes
0
replies
337
views
Inferring relative gene abundance from short reads
metagenomics
read
16S
short
mapping
12 months ago by
SushiRoll
▴ 120
2
votes
5
replies
931
views
How many refseqs are in refseq.genomes.k21.s1000.msh?
mash
refseq
13 months ago by
SushiRoll
▴ 120
2
votes
4
replies
790
views
Retrieve specific fasta sequences from a group of assemblies
CDS
gene
sequence
15 months ago by
SushiRoll
▴ 120
1
vote
0
replies
436
views
Enzyme substrate prediction - where to start?
enzyme
substrate
Protein
docking
15 months ago by
SushiRoll
▴ 120
0
votes
0
replies
368
views
NMDS from SNP distance matrix
NMDS
SNP
15 months ago by
SushiRoll
▴ 120
0
votes
4
replies
761
views
How many SNPs are too many?
snp
17 months ago by
SushiRoll
▴ 120
0
votes
0
replies
410
views
Using -fconst to run IQTree
IQtree
phylogeny
17 months ago by
SushiRoll
▴ 120
0
votes
0
replies
631
views
Snippy core output
SNP
Snippy-core
Snippy
17 months ago by
SushiRoll
▴ 120
0
votes
0
replies
346
views
qPCR and HT-PCR inconsistency
HT-PCR
qPCR
17 months ago by
SushiRoll
▴ 120
2
votes
2
replies
989
views
Doubt with snippy-multi reference
snippy-multi
Snippy
18 months ago by
SushiRoll
▴ 120
0
votes
0
replies
341
views
Problems installing PlasClass
PlasClass
18 months ago by
SushiRoll
▴ 120
0
votes
3
replies
918
views
Resources for heavy snippy-core running
Snippy
snippy-core
19 months ago by
SushiRoll
▴ 120
0
votes
3
replies
1.1k
views
samtools sort: couldn't allocate memory for bam_mem
Snippy
updated 19 months ago by
ATpoint
82k • written 19 months ago by
SushiRoll
▴ 120
2
votes
2
replies
651
views
ln: failed to create symbolic link './ref.fa': Operation not supported
Snippy
19 months ago by
SushiRoll
▴ 120
0
votes
0
replies
551
views
Crunch file for Artemis Comparison Tool
WGS
ACT
Artemis
21 months ago by
SushiRoll
▴ 120
2
votes
2
replies
589
views
Sequence duplication FASTQC - genome sequencing
FASTQC
WGS
DNAseq
updated 22 months ago by
lieven.sterck
15k • written 22 months ago by
SushiRoll
▴ 120
0
votes
3
replies
635
views
Doubts with mash output
mash
gwas
24 months ago by
SushiRoll
▴ 120
0
votes
0
replies
375
views
Help using Kraken - chimera filtering
Kraken
chimera
2.1 years ago by
SushiRoll
▴ 120
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