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Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
3.1 years ago by Raju • 0
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2
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1.4k
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
3.1 years ago by Raju • 0
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4
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1.4k
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How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
plink LD SNP
updated 3.1 years ago by ▴ 60 • written 3.1 years ago by • 0
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0
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552
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Get all SNPs that are high in Linkage Disequilibrium for set of SNPs
plink LD linkagedisequilibrium snps
3.1 years ago by Raju • 0
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0
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7.5k
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Answer: Answer: [SOLVED] Get LD data for any two SNPs
3.1 years ago by Raju • 0
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1
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650
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How Can I Find SNP id from Chromosome Position?
plink python gwas chromosome
updated 3.2 years ago by 166k • written 3.2 years ago by • 0
2
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1
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623
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I am trying to convert a tab file to bed what is the best command to do this?
plink gwas
updated 3.2 years ago by 166k • written 3.2 years ago by • 0
0
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1
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870
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Data Description of Output of .glm.linear file
plink glm plink2 linear
updated 3.3 years ago by 2.9k • written 3.3 years ago by • 0
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0
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618
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How to Calculate GWAS Summary Statistics?
plink GWAS
3.3 years ago by Raju • 0
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0
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530
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How to Calcualte "Effect Size" and "Effect Allele" of each SNP
EffectAllele EffectSize plink allele gwas
3.3 years ago by Raju • 0
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1
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949
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How to find Polygenic Risk Scores?
plink PRSice2 PolygenicRiskScore vcf
updated 3.3 years ago by ▴ 160 • written 3.3 years ago by • 0
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0
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4.3k
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Comment: Comment: How To Generate .Dat File For Imputation In Mach??
3.3 years ago by Raju • 0
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0
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542
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How to convert .bed/.bim/.fam file to .dat file to run --dosage command to get INFO
plink dosage
updated 2.5 years ago by 45k • written 3.3 years ago by • 0
0
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1
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845
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Comment: Comment: Which data files are required to find GWAS summary statistics?
3.3 years ago by Raju • 0
0
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3
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845
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Which data files are required to find GWAS summary statistics?
plink
updated 3.3 years ago by 2.9k • written 3.3 years ago by • 0
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1
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620
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How to Extract Values for SNPs by each chromosome and position using --window
plink
updated 3.3 years ago by 166k • written 3.3 years ago by • 0
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0
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502
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Extact SNPs ID's and their Values with IID, Additive and dominance components
plink
3.4 years ago by Raju • 0
0
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1
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860
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Additive and dominance components for .ped file
plink
updated 3.4 years ago by 11k • written 3.4 years ago by • 0
0
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1
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755
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How tp Extract SNPs values
plink
updated 3.4 years ago by 12k • written 3.4 years ago by • 0
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0
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410
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Command to extract SNPs rs17782313 from VCF file using bcftool
bcftools
3.4 years ago by Raju • 0
1
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1
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1.4k
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How to Extract Sample Id's from .bed|.fam|.bim files and be able to translate sample IDs from GWAS IDs to IDs of a given cohort
plink
updated 3.4 years ago by 12k • written 3.4 years ago by • 0
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1
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659
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How to Select data for a SNP for all samples using PLINK
plink
updated 3.4 years ago by 12k • written 3.4 years ago by • 0
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0
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1.1k
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Comment: Comment: How to extract a subset of samples from plink .bed files
3.4 years ago by Raju • 0
0
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1
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1.1k
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Comment: Comment: How to extract a subset of samples from plink .bed files
3.4 years ago by Raju • 0
0
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3
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1.1k
views
How to extract a subset of samples from plink .bed files
plink
3.4 years ago by Raju • 0
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