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Comment:
Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
21 months ago by
Raju
• 0
0
votes
2
replies
865
views
Comment:
Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
21 months ago by
Raju
• 0
0
votes
4
replies
865
views
How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
plink
LD
SNP
updated 21 months ago by
Quentin M
▴ 60 • written 21 months ago by
Raju
• 0
0
votes
0
replies
354
views
Get all SNPs that are high in Linkage Disequilibrium for set of SNPs
plink
LD
linkagedisequilibrium
snps
21 months ago by
Raju
• 0
0
votes
0
replies
5.6k
views
Answer:
Answer: [SOLVED] Get LD data for any two SNPs
21 months ago by
Raju
• 0
0
votes
1
reply
414
views
How Can I Find SNP id from Chromosome Position?
plink
python
gwas
chromosome
updated 21 months ago by
Pierre Lindenbaum
161k • written 21 months ago by
Raju
• 0
2
votes
1
reply
396
views
I am trying to convert a tab file to bed what is the best command to do this?
plink
gwas
updated 22 months ago by
Pierre Lindenbaum
161k • written 22 months ago by
Raju
• 0
0
votes
1
reply
575
views
Data Description of Output of .glm.linear file
plink
glm
plink2
linear
updated 23 months ago by
4galaxy77
2.8k • written 23 months ago by
Raju
• 0
0
votes
0
replies
377
views
How to Calculate GWAS Summary Statistics?
plink
GWAS
23 months ago by
Raju
• 0
0
votes
0
replies
341
views
How to Calcualte "Effect Size" and "Effect Allele" of each SNP
EffectAllele
EffectSize
plink
allele
gwas
23 months ago by
Raju
• 0
0
votes
1
reply
577
views
How to find Polygenic Risk Scores?
plink
PRSice2
PolygenicRiskScore
vcf
updated 23 months ago by
kanika.151
▴ 130 • written 23 months ago by
Raju
• 0
0
votes
0
replies
3.8k
views
Comment:
Comment: How To Generate .Dat File For Imputation In Mach??
23 months ago by
Raju
• 0
0
votes
0
replies
333
views
How to convert .bed/.bim/.fam file to .dat file to run --dosage command to get INFO
plink
dosage
updated 13 months ago by
Ram
43k • written 23 months ago by
Raju
• 0
0
votes
1
reply
525
views
Comment:
Comment: Which data files are required to find GWAS summary statistics?
23 months ago by
Raju
• 0
0
votes
3
replies
525
views
Which data files are required to find GWAS summary statistics?
plink
updated 23 months ago by
4galaxy77
2.8k • written 23 months ago by
Raju
• 0
0
votes
1
reply
392
views
How to Extract Values for SNPs by each chromosome and position using --window
plink
updated 23 months ago by
Pierre Lindenbaum
161k • written 23 months ago by
Raju
• 0
0
votes
0
replies
325
views
Extact SNPs ID's and their Values with IID, Additive and dominance components
plink
2.0 years ago by
Raju
• 0
0
votes
1
reply
498
views
Additive and dominance components for .ped file
plink
updated 2.0 years ago by
chrchang523
10k • written 2.0 years ago by
Raju
• 0
0
votes
1
reply
475
views
How tp Extract SNPs values
plink
updated 2.1 years ago by
zx8754
11k • written 2.1 years ago by
Raju
• 0
0
votes
0
replies
272
views
Command to extract SNPs rs17782313 from VCF file using bcftool
bcftools
2.1 years ago by
Raju
• 0
1
vote
1
reply
949
views
How to Extract Sample Id's from .bed|.fam|.bim files and be able to translate sample IDs from GWAS IDs to IDs of a given cohort
plink
updated 2.1 years ago by
zx8754
11k • written 2.1 years ago by
Raju
• 0
0
votes
1
reply
429
views
How to Select data for a SNP for all samples using PLINK
plink
updated 2.1 years ago by
zx8754
11k • written 2.1 years ago by
Raju
• 0
0
votes
0
replies
646
views
Comment:
Comment: How to extract a subset of samples from plink .bed files
2.1 years ago by
Raju
• 0
0
votes
1
reply
646
views
Comment:
Comment: How to extract a subset of samples from plink .bed files
2.1 years ago by
Raju
• 0
0
votes
3
replies
646
views
How to extract a subset of samples from plink .bed files
plink
2.1 years ago by
Raju
• 0
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