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Single-end strand specific Rna-Seq: Which strand that the reads from.
mRNA Single-end strand-specific TruSeq
updated 8 months ago by ★ 1.9k • written 8 months ago by ▴ 10
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0
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610
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Convert ONE pair-end BAM file to ONE single-end BAM file with merged mates (i.e. merging the paired reads coverage)
MACS2 BAM paired-end single-end
updated 9 months ago by 43k • written 18 months ago by ▴ 10
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1.7k
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
19 months ago by Chilly ▴ 10
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1
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1.7k
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
19 months ago by Chilly ▴ 10
0
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1
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1.7k
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Comment: Comment: Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM
19 months ago by Chilly ▴ 10
1
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6
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1.7k
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Mutect2 produces 0 results for somatic mutation calling of paired-end reads (BAM)
Mutect2 RNA-seq mutation paired-end variant
19 months ago by Chilly ▴ 10
3
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1
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592
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How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time from Bowtie2 (version 2.3.4.1 or high)?
RNA-seq pair-end concordantly bowtie2 alignment
20 months ago by Chilly ▴ 10
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0
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592
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Answer: Answer: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time from Bowtie2 (ver
20 months ago by Chilly ▴ 10
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24k
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Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
20 months ago by Chilly ▴ 10
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1
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1.4k
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Comment: Comment: What tools are available for downstream analysis of 10x scATAC-seq in entirely n
22 months ago by Chilly ▴ 10
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1
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1.4k
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Comment: Comment: What tools are available for downstream analysis of 10x scATAC-seq in entirely n
22 months ago by Chilly ▴ 10
4
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6
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1.4k
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What tools are available for downstream analysis of 10x scATAC-seq in entirely new organisms?
downstream 10x non-model scATAC
updated 9 months ago by • 0 • written 22 months ago by ▴ 10
3
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1
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514
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How to apply a set of 8 fastq files produced by Paired-end NovaSeq to bowtie2 or bwa for alignment?
alignment NovaSeq bowtie fastq bwa
updated 22 months ago by 82k • written 22 months ago by ▴ 10
1
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2
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690
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How to achieve dislocation comparison, filtering and fusion of adjacent rows in a data table in R
r matrix comparison filtering loop
23 months ago by Chilly ▴ 10
0
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1
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690
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Comment: Comment: How to achieve dislocation comparison, filtering and fusion of adjacent rows in
23 months ago by Chilly ▴ 10
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0
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1.5k
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Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
23 months ago by Chilly ▴ 10
5
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8
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1.5k
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How to use R's loop to get the part of the aggregate matrix other than the many subset matrices?
aggregate r matrix loop subset
23 months ago by Chilly ▴ 10
0
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1
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1.5k
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Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
23 months ago by Chilly ▴ 10
0
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1
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1.5k
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Comment: Comment: How to use R's loop to get the part of the aggregate matrix other than the many
23 months ago by Chilly ▴ 10
0
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0
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808
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how could I select low 'fraction fragments overlapping peaks' but 'high fragments per barcode' in scATAC-seq analysis?
cellranger ATAC-seq peak ATAC 10x
23 months ago by Chilly ▴ 10
1
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1
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611
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How to use MARS-seq dataset for 10X scRNA-seq cluster annotation (i.e. convert the dataset to Seurat object)
10X MARS-seq scRNA-seq single-cell Seurat
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 10
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