Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
603
views
Interprete plot of dispersion estimation by DESeq2
dispersion DEXseq DESeq2
updated 19 months ago by 166k • written 19 months ago by ▴ 40
5
votes
8
replies
7.4k
views
Distinguish between forward strand, plus strand, sense strand
pysam strand star sam
updated 2.2 years ago by • 0 • written 3.3 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Comment: Comment: Error in cellranger count
2.4 years ago by tien ▴ 40
0
votes
2
replies
1.2k
views
Error in cellranger count
cellranger
2.4 years ago by tien ▴ 40
3
votes
1
reply
999
views
DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
dispersion DEXseq R
3.1 years ago by tien ▴ 40
1
vote
0
replies
999
views
Answer: Answer: DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
3.1 years ago by tien ▴ 40
0
votes
1
reply
3.7k
views
PrepSCTFindMarkers() before Findmarker() by Seurat
findmarker seurat PrepSCTFindMarkers
updated 3.0 years ago by ▴ 10 • written 3.1 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
3.2 years ago by tien ▴ 40
0
votes
1
reply
1.3k
views
Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
3.2 years ago by tien ▴ 40
0
votes
4
replies
1.3k
views
Sudden drop in coverage in single-cell RNA-sequencing data
singlecell
3.2 years ago by tien ▴ 40
0
votes
0
replies
1.4k
views
Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
3.2 years ago by tien ▴ 40
4
votes
3
replies
1.4k
views
Difference in sashimi plot between single-cell versus bulk RNA-seq data
pysashimi
3.2 years ago by tien ▴ 40
0
votes
0
replies
1.1k
views
Comment: Comment: Plot splicing summary using ggbio
3.2 years ago by tien ▴ 40
0
votes
2
replies
1.1k
views
Plot splicing summary using ggbio
splicing ggbio
3.2 years ago by tien ▴ 40
0
votes
0
replies
7.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
3.3 years ago by tien ▴ 40
0
votes
1
reply
7.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
3.3 years ago by tien ▴ 40
0
votes
1
reply
7.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
3.3 years ago by tien ▴ 40
0
votes
0
replies
7.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
3.3 years ago by tien ▴ 40
0
votes
0
replies
594
views
Difference between query_alignment_length, template_length, reference_length
pysam
3.3 years ago by tien ▴ 40
0
votes
2
replies
1.4k
views
How Cell ranger count UMI from intronic region in the latest version
cellranger
updated 2.9 years ago by 45k • written 3.4 years ago by ▴ 40
0
votes
0
replies
2.5k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
3.4 years ago by tien ▴ 40
0
votes
1
reply
2.5k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
3.4 years ago by tien ▴ 40
0
votes
0
replies
2.5k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
3.4 years ago by tien ▴ 40
0
votes
3
replies
2.5k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
3.4 years ago by tien ▴ 40
3
votes
7
replies
2.5k
views
UMI and CB for the same sample but different lane by 10X single-cell RNA sequencing
10X RNA single-cell
3.4 years ago by tien ▴ 40
0
votes
0
replies
1.4k
views
Comment: Comment: Detecting duplicated UMI in BAM file
3.4 years ago by tien ▴ 40
0
votes
2
replies
1.4k
views
Detecting duplicated UMI in BAM file
UMI BAM
3.4 years ago by tien ▴ 40
1
vote
4
replies
1.8k
views
Read is confidently mapped to the transcriptome in Cell Ranger
cellranger intergenic intron transcriptome alignment
updated 3.4 years ago by 154k • written 3.4 years ago by ▴ 40
0
votes
0
replies
1.8k
views
Answer: Answer: Read is confidently mapped to the transcriptome in Cell Ranger
3.4 years ago by tien ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: Read is confidently mapped to the transcriptome in Cell Ranger
3.4 years ago by tien ▴ 40
0
votes
0
replies
1.7k
views
Comment: Comment: Positions of different gene id are overlapped
3.4 years ago by tien ▴ 40
0
votes
1
reply
1.7k
views
Comment: Comment: Positions of different gene id are overlapped
3.4 years ago by tien ▴ 40
0
votes
0
replies
1.7k
views
Comment: Comment: Positions of different gene id are overlapped
3.4 years ago by tien ▴ 40
4
votes
6
replies
1.7k
views
Positions of different gene id are overlapped
cellranger gtf
3.4 years ago by tien ▴ 40
0
votes
0
replies
3.4k
views
Comment: Comment: Create singlecellexperiment object with colData
3.4 years ago by tien ▴ 40
0
votes
0
replies
2.5k
views
Comment: Comment: Count number of unique cell barcode (CB) in bam file
3.4 years ago by tien ▴ 40
2
votes
2
replies
2.5k
views
Count number of unique cell barcode (CB) in bam file
cell-ranger samtools BAM cell-barcode
updated 2.4 years ago by 45k • written 3.4 years ago by ▴ 40
0
votes
1
reply
3.4k
views
Comment: Comment: Create singlecellexperiment object with colData
3.4 years ago by tien ▴ 40
0
votes
0
replies
3.4k
views
Comment: Comment: Create singlecellexperiment object with colData
3.4 years ago by tien ▴ 40
0
votes
1
reply
3.4k
views
Comment: Comment: Create singlecellexperiment object with colData
3.4 years ago by tien ▴ 40
4
votes
8
replies
3.4k
views
Create singlecellexperiment object with colData
singlecellexperiment
3.4 years ago by tien ▴ 40
0
votes
0
replies
585
views
Cannot map some GENEID to SEQNAME from EnsDb.Hsapiens.v86 database
annotation cellranger
3.5 years ago by tien ▴ 40
0
votes
1
reply
1.1k
views
Comment: Comment: Extract bed file of uwanted chromosome names and positions from bam file
3.5 years ago by tien ▴ 40
0
votes
3
replies
1.1k
views
Extract bed file of uwanted chromosome names and positions from bam file
bed bam samtools
updated 2.6 years ago by 45k • written 3.5 years ago by ▴ 40
44 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6