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204
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Interprete plot of dispersion estimation by DESeq2
dispersion DEXseq DESeq2
updated 5 weeks ago by 161k • written 5 weeks ago by ▴ 10
5
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8
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3.4k
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Distinguish between forward strand, plus strand, sense strand
pysam strand star sam
updated 7 months ago by • 0 • written 21 months ago by ▴ 10
0
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0
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677
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Comment: Comment: Error in cellranger count
10 months ago by tien ▴ 10
0
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2
replies
677
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Error in cellranger count
cellranger
10 months ago by tien ▴ 10
0
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1
reply
517
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DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
dispersion DEXseq R
18 months ago by tien ▴ 10
0
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0
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517
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Answer: Answer: DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
18 months ago by tien ▴ 10
0
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1
reply
2.1k
views
PrepSCTFindMarkers() before Findmarker() by Seurat
findmarker seurat PrepSCTFindMarkers
updated 17 months ago by ▴ 10 • written 19 months ago by ▴ 10
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0
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731
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Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
20 months ago by tien ▴ 10
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1
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731
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Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
20 months ago by tien ▴ 10
0
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4
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731
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Sudden drop in coverage in single-cell RNA-sequencing data
singlecell
20 months ago by tien ▴ 10
0
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0
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734
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Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
20 months ago by tien ▴ 10
4
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3
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734
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Difference in sashimi plot between single-cell versus bulk RNA-seq data
pysashimi
20 months ago by tien ▴ 10
0
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0
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581
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Comment: Comment: Plot splicing summary using ggbio
21 months ago by tien ▴ 10
0
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2
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581
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Plot splicing summary using ggbio
splicing ggbio
21 months ago by tien ▴ 10
0
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0
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3.4k
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Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
votes
1
reply
3.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
votes
1
reply
3.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
votes
0
replies
3.4k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
votes
0
replies
328
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Difference between query_alignment_length, template_length, reference_length
pysam
22 months ago by tien ▴ 10
0
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2
replies
570
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How Cell ranger count UMI from intronic region in the latest version
cellranger
updated 16 months ago by 43k • written 22 months ago by ▴ 10
0
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0
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1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
22 months ago by tien ▴ 10
0
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1
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1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
22 months ago by tien ▴ 10
0
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0
replies
1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
22 months ago by tien ▴ 10
0
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3
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1.4k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
22 months ago by tien ▴ 10
3
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7
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1.4k
views
UMI and CB for the same sample but different lane by 10X single-cell RNA sequencing
10X RNA single-cell
22 months ago by tien ▴ 10
0
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0
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856
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Comment: Comment: Detecting duplicated UMI in BAM file
22 months ago by tien ▴ 10
0
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2
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856
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Detecting duplicated UMI in BAM file
UMI BAM
22 months ago by tien ▴ 10
1
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4
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1.0k
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Read is confidently mapped to the transcriptome in Cell Ranger
cellranger intergenic intron transcriptome alignment
updated 22 months ago by 141k • written 22 months ago by ▴ 10
0
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0
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1.0k
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Answer: Answer: Read is confidently mapped to the transcriptome in Cell Ranger
22 months ago by tien ▴ 10
0
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1
reply
1.0k
views
Comment: Comment: Read is confidently mapped to the transcriptome in Cell Ranger
22 months ago by tien ▴ 10
0
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0
replies
960
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Comment: Comment: Positions of different gene id are overlapped
22 months ago by tien ▴ 10
0
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1
reply
960
views
Comment: Comment: Positions of different gene id are overlapped
22 months ago by tien ▴ 10
0
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0
replies
960
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Comment: Comment: Positions of different gene id are overlapped
22 months ago by tien ▴ 10
4
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6
replies
960
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Positions of different gene id are overlapped
cellranger gtf
22 months ago by tien ▴ 10
0
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0
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2.0k
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Comment: Comment: Create singlecellexperiment object with colData
22 months ago by tien ▴ 10
0
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0
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1.5k
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Comment: Comment: Count number of unique cell barcode (CB) in bam file
23 months ago by tien ▴ 10
2
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2
replies
1.5k
views
Count number of unique cell barcode (CB) in bam file
cell-ranger samtools BAM cell-barcode
updated 10 months ago by 43k • written 23 months ago by ▴ 10
0
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1
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2.0k
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Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
0
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0
replies
2.0k
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Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
0
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1
reply
2.0k
views
Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
4
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8
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2.0k
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Create singlecellexperiment object with colData
singlecellexperiment
22 months ago by tien ▴ 10
0
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0
replies
358
views
Cannot map some GENEID to SEQNAME from EnsDb.Hsapiens.v86 database
annotation cellranger
23 months ago by tien ▴ 10
0
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1
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665
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Comment: Comment: Extract bed file of uwanted chromosome names and positions from bam file
23 months ago by tien ▴ 10
0
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3
replies
665
views
Extract bed file of uwanted chromosome names and positions from bam file
bed bam samtools
updated 13 months ago by 43k • written 23 months ago by ▴ 10
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