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0
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137
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Filter low express genes in microarray data
microarray
4 days ago by
Chris
▴ 260
1
vote
1
reply
433
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 10 days ago by
Gordon Smyth
★ 7.1k • written 13 days ago by
Chris
▴ 260
0
votes
0
replies
131
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
22 days ago by
Chris
▴ 260
0
votes
1
reply
333
views
Comment:
Comment: Visualize pathways from MSigDB
26 days ago by
Chris
▴ 260
3
votes
3
replies
333
views
Visualize pathways from MSigDB
MSigdb
26 days ago by
Chris
▴ 260
0
votes
0
replies
131
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
4 weeks ago by
Chris
▴ 260
0
votes
0
replies
423
views
Comment:
Comment: Limma compare between 3 conditions vs 2 conditions
5 weeks ago by
Chris
▴ 260
0
votes
0
replies
123
views
Number of pathway result from GSVA
GSVA
4 weeks ago by
Chris
▴ 260
1
vote
3
replies
423
views
Limma compare between 3 conditions vs 2 conditions
Limma
updated 14 days ago by
Gordon Smyth
★ 7.1k • written 5 weeks ago by
Chris
▴ 260
1
vote
1
reply
539
views
Help with SCENIC+
scenic-plus
updated 5 weeks ago by
corbettberry
▴ 10 • written 6 months ago by
Chris
▴ 260
0
votes
0
replies
446
views
Comment:
Comment: Differential express genes in imbalance groups
6 weeks ago by
Chris
▴ 260
0
votes
0
replies
446
views
Comment:
Comment: Differential express genes in imbalance groups
6 weeks ago by
Chris
▴ 260
4
votes
5
replies
446
views
Differential express genes in imbalance groups
Limma
6 weeks ago by
Chris
▴ 260
0
votes
0
replies
276
views
Comment:
Comment: Upset plot
6 weeks ago by
Chris
▴ 260
1
vote
2
replies
276
views
Upset plot
upsetplot
6 weeks ago by
Chris
▴ 260
0
votes
0
replies
276
views
Comment:
Comment: How to get genes in a gene set in msigdb?
7 weeks ago by
Chris
▴ 260
0
votes
2
replies
276
views
How to get genes in a gene set in msigdb?
msigdb
26 days ago by
Chris
▴ 260
0
votes
0
replies
136
views
Function normalize raw microarray data for GSVA
gsva
7 weeks ago by
Chris
▴ 260
0
votes
0
replies
405
views
Error in validObject(.Object) : invalid class “ExpressionSet” object: sampleNames differ between assayData and phenoData
GSVA
8 weeks ago by
Chris
▴ 260
0
votes
1
reply
436
views
Comment:
Comment: Differential expression at pathway level
10 weeks ago by
Chris
▴ 260
1
vote
0
replies
436
views
Comment:
Comment: Differential expression at pathway level
10 weeks ago by
Chris
▴ 260
5
votes
4
replies
436
views
Differential expression at pathway level
GSVA
updated 10 weeks ago by
AquaDeath
▴ 80 • written 10 weeks ago by
Chris
▴ 260
0
votes
1
reply
664
views
Comment:
Comment: Remove X in row name with only number
12 weeks ago by
Chris
▴ 260
0
votes
1
reply
664
views
Comment:
Comment: Remove X in row name with only number
12 weeks ago by
Chris
▴ 260
0
votes
1
reply
664
views
Comment:
Comment: Remove X in row name with only number
12 weeks ago by
Chris
▴ 260
7
votes
12
replies
1.9k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 12 weeks ago by
Ram
43k • written 11 months ago by
Chris
▴ 260
0
votes
1
reply
664
views
Comment:
Comment: Remove X in row name with only number
12 weeks ago by
Chris
▴ 260
0
votes
1
reply
664
views
Comment:
Comment: Remove X in row name with only number
12 weeks ago by
Chris
▴ 260
4
votes
11
replies
664
views
Remove X in row name with only number
GSVA
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
2
replies
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Help with gatk BaseRecalibrator
4 months ago by
Chris
▴ 260
12
votes
20
replies
1.3k
views
Help with gatk BaseRecalibrator
GATK
variant-calling
updated 4 months ago by
Ram
43k • written 4 months ago by
Chris
▴ 260
6
votes
4
replies
2.0k
views
Methods to integrate ATAC-seq and RNA-seq
RNA-seq
ATAC-seq
updated 4 months ago by
Tao Zhu
▴ 10 • written 9 months ago by
Chris
▴ 260
0
votes
0
replies
421
views
Comment:
Comment: Help with gatk CreateSequenceDictionary
4 months ago by
Chris
▴ 260
2
votes
2
replies
421
views
Help with gatk CreateSequenceDictionary
GATK
updated 4 months ago by
GenoMax
141k • written 4 months ago by
Chris
▴ 260
2
votes
2
replies
1.1k
views
Help with scvelo
scvelo
updated 5 months ago by
Prakki Rama
★ 2.7k • written 6 months ago by
Chris
▴ 260
0
votes
0
replies
457
views
Help with cellchat error
cellchat
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
Chris
▴ 260
0
votes
1
reply
1.3k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
Chris
▴ 260
6
votes
10
replies
1.3k
views
Visualization of RNA-seq gene expression only one gene of interest between 2 conditions
RNA-seq
6 months ago by
Chris
▴ 260
0
votes
2
replies
1.3k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
6 months ago by
Chris
▴ 260
1
vote
0
replies
247
views
Help with Enrichr clustergram
enrichr
6 months ago by
Chris
▴ 260
0
votes
1
reply
860
views
Comment:
Comment: Novel disease mechanism papers from RNA-seq
6 months ago by
Chris
▴ 260
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