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0
votes
2
replies
751
views
Stratified sample assignment for analysis
experimental-design
stratification
updated 15 months ago by
ATpoint
84k • written 15 months ago by
fr
▴ 210
1
vote
0
replies
298
views
Linear models with limma: coefficients not estimatable, are the others OK?
limma
15 months ago by
fr
▴ 210
0
votes
0
replies
365
views
Positive TPM in genes with 0 counts from StringTie?
RNAseq
stringtie
19 months ago by
fr
▴ 210
0
votes
0
replies
2.2k
views
Comment:
Comment: Whole blood single cell RNA-seq dataset?
2.8 years ago by
fr
▴ 210
0
votes
0
replies
1.2k
views
Comment:
Comment: Retrieving and interpreting specific contrast results from an interaction experi
2.8 years ago by
fr
▴ 210
0
votes
2
replies
1.2k
views
Retrieving and interpreting specific contrast results from an interaction experiment in DESeq2
deseq2
2.8 years ago by
fr
▴ 210
0
votes
0
replies
1.7k
views
Comment:
Comment: Covariate correction which data take for downstream analysis?
2.8 years ago by
fr
▴ 210
1
vote
0
replies
1.9k
views
Comment:
Comment: Single-stranded RNA-seq: strandedness of samples
3.1 years ago by
fr
▴ 210
4
votes
4
replies
1.9k
views
Single-stranded RNA-seq: strandedness of samples
rnaseq
3.1 years ago by
fr
▴ 210
0
votes
0
replies
1.9k
views
Comment:
Comment: Single-stranded RNA-seq: strandedness of samples
3.1 years ago by
fr
▴ 210
0
votes
0
replies
27k
views
Comment:
Comment: how to plot multi pheatmap into one figure
3.3 years ago by
fr
▴ 210
0
votes
0
replies
1.8k
views
Comment:
Comment: limma: extracting coefficients for complex models
3.3 years ago by
fr
▴ 210
0
votes
0
replies
781
views
limma: extracting coefficients and design matrix?
limma
glm
updated 3.3 years ago by
cpad0112
21k • written 3.3 years ago by
fr
▴ 210
0
votes
0
replies
1.8k
views
Comment:
Comment: limma: extracting coefficients for complex models
3.3 years ago by
fr
▴ 210
1
vote
3
replies
1.8k
views
limma: extracting coefficients for complex models
limma
r
3.3 years ago by
fr
▴ 210
0
votes
1
reply
1.6k
views
Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
deseq
edger
limma
lasso
RF
updated 3.8 years ago by
Biostar
20 • written 3.9 years ago by
fr
▴ 210
0
votes
0
replies
1.2k
views
Comment:
C: Limma contrasts and design: should it be split based on time points?
3.9 years ago by
fr
▴ 210
0
votes
1
reply
1.2k
views
Comment:
C: Limma contrasts and design: should it be split based on time points?
3.9 years ago by
fr
▴ 210
0
votes
0
replies
993
views
Comment:
C: Limma contrasts matrix drops columns and considers them as reference column
3.9 years ago by
fr
▴ 210
0
votes
2
replies
993
views
Limma contrasts matrix drops columns and considers them as reference column
limma
design
updated 3.9 years ago by
Luiz
▴ 30 • written 3.9 years ago by
fr
▴ 210
3
votes
4
replies
1.2k
views
Limma contrasts and design: should it be split based on time points?
limma
design
3.9 years ago by
fr
▴ 210
0
votes
0
replies
1.2k
views
Comment:
C: R design on 2-way interaction not displaying all options
4.0 years ago by
fr
▴ 210
0
votes
2
replies
1.2k
views
R design on 2-way interaction not displaying all options
modeling
design
limma
deseq
edger
4.0 years ago by
fr
▴ 210
0
votes
0
replies
3.6k
views
Comment:
C: limma fold change problem
4.0 years ago by
fr
▴ 210
4
votes
4
replies
2.8k
views
Computing significance of overlap between two gene lists in Python
python
hypergeometric
fishers
updated 4.3 years ago by
Biostar
20 • written 4.4 years ago by
fr
▴ 210
0
votes
0
replies
2.1k
views
Comment:
C: RNAseq: should I trim both 3' and 5'?
4.3 years ago by
fr
▴ 210
1
vote
3
replies
2.1k
views
RNAseq: should I trim both 3' and 5'?
RNA-Seq
updated 4.3 years ago by
swbarnes2
14k • written 4.3 years ago by
fr
▴ 210
0
votes
1
reply
2.8k
views
Comment:
C: Computing significance of overlap between two gene lists in Python
4.4 years ago by
fr
▴ 210
2
votes
1
reply
1.3k
views
RNAseq: differences when shifting from 100bp to 150bp?
RNA-Seq
4.4 years ago by
fr
▴ 210
0
votes
0
replies
7.7k
views
Comment:
C: Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]
4.6 years ago by
fr
▴ 210
2
votes
0
replies
2.5k
views
Homer's findPeaks: normalized Tag counts, Peak Score, and RPKMs
ChIP-Seq
HOMER
atac-seq
4.7 years ago by
fr
▴ 210
0
votes
1
reply
1.3k
views
Strange output from Homer findPeaks
homer
atac-seq
updated 15 months ago by
Ram
44k • written 4.8 years ago by
fr
▴ 210
0
votes
0
replies
740
views
meaning of "Total subpeaks" in Homer's mergePeaks?
homer
ChIP-Seq
atac-seq
4.7 years ago by
fr
▴ 210
4
votes
2
replies
791
views
How to export more than 1000 entries in IPA
ipa
ingenuity pathway analysis
updated 4.7 years ago by
Biostar
20 • written 4.8 years ago by
fr
▴ 210
0
votes
1
reply
3.2k
views
Comment:
C: How to view bigwig files in UCSC with windowed coverage?
4.8 years ago by
fr
▴ 210
0
votes
1
reply
3.2k
views
Comment:
C: How to view bigwig files in UCSC with windowed coverage?
4.8 years ago by
fr
▴ 210
0
votes
1
reply
3.2k
views
Comment:
C: How to view bigwig files in UCSC with windowed coverage?
4.8 years ago by
fr
▴ 210
4
votes
9
replies
3.2k
views
How to view bigwig files in UCSC with windowed coverage?
ucsc
atac-seq
ChIP-Seq
updated 15 months ago by
Ram
44k • written 4.8 years ago by
fr
▴ 210
0
votes
0
replies
3.2k
views
Comment:
C: How to view bigwig files in UCSC
4.8 years ago by
fr
▴ 210
1
vote
0
replies
4.3k
views
Comment:
C: Perl script: generate pseudo-CDSs from intergenic region
updated 4.8 years ago by
Ram
44k • written 9.1 years ago by
fr
▴ 210
2
votes
1
reply
1.6k
views
Visualizing bigwig tracks
ChIP-Seq
RNA-Seq
updated 4.9 years ago by
colin.kern
★ 1.1k • written 4.9 years ago by
fr
▴ 210
0
votes
1
reply
33k
views
Comment:
C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
5.1 years ago by
fr
▴ 210
0
votes
0
replies
1.5k
views
Comment:
C: Homer annotatePeaks on genomic regions
5.2 years ago by
fr
▴ 210
3
votes
2
replies
1.5k
views
Homer annotatePeaks on genomic regions
homer
ChIP-Seq
annotatepeaks
updated 5.2 years ago by
bruss
▴ 30 • written 5.2 years ago by
fr
▴ 210
0
votes
1
reply
3.1k
views
Comment:
C: How to bin my count data for the entire genome?
5.2 years ago by
fr
▴ 210
0
votes
1
reply
4.8k
views
Comment:
C: RNAseq: Fisher-exact test with Benjamini-Hochberg multiple-testing correction us
5.2 years ago by
fr
▴ 210
0
votes
1
reply
4.8k
views
Comment:
C: RNAseq: Fisher-exact test with Benjamini-Hochberg multiple-testing correction us
5.2 years ago by
fr
▴ 210
7
votes
3
replies
3.1k
views
How to bin my count data for the entire genome?
ChIP-Seq
next-gen
sequencing
genome
homer
updated 5.2 years ago by
Prakash
★ 2.2k • written 5.2 years ago by
fr
▴ 210
0
votes
0
replies
2.6k
views
Comment:
C: Combine .bed files and keep columns / headers
5.3 years ago by
fr
▴ 210
0
votes
1
reply
2.6k
views
Comment:
C: Combine .bed files and keep columns / headers
5.3 years ago by
fr
▴ 210
133 results • Page
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