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MISO: Extraction of splicing events from user specified gene annotation (gtf or gff)
RNA-Seq MISO
updated 5.5 years ago by ▴ 20 • written 6.9 years ago by ▴ 90
3
votes
5
replies
3.9k
views
How to run MISO with ENSEMBL GTF if reads were aligned against UCSC genome
RNA-Seq
updated 7.0 years ago by ▴ 20 • written 9.6 years ago by ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: CLIP-Seq read density
7.9 years ago by Anil Kesarwani ▴ 90
2
votes
2
replies
2.1k
views
CLIP-Seq read density
rna-seq
updated 7.9 years ago by 141k • written 7.9 years ago by ▴ 90
0
votes
0
replies
2.0k
views
Normalization of CLIP peak by transcript level
RNA-Seq
updated 21 months ago by 43k • written 8.2 years ago by ▴ 90
1
vote
1
reply
2.7k
views
How to calculate differential usage of splice junction
RNA-Seq
updated 15 months ago by 43k • written 8.9 years ago by ▴ 90
0
votes
0
replies
3.0k
views
Comment: C: DEXSeq missing mate encountered
8.9 years ago by Anil Kesarwani ▴ 90
0
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1
reply
3.0k
views
Comment: C: DEXSeq missing mate encountered
8.9 years ago by Anil Kesarwani ▴ 90
0
votes
5
replies
3.0k
views
DEXSeq missing mate encountered
RNA-Seq
updated 19 months ago by 43k • written 8.9 years ago by ▴ 90
0
votes
0
replies
2.1k
views
DEXSeq memory issue
RNA-Seq DEXSeq
updated 14 months ago by 43k • written 8.9 years ago by ▴ 90
0
votes
0
replies
2.4k
views
Comment: Comment: Differential quantification of splice junction
updated 14 months ago by 43k • written 9.0 years ago by ▴ 90
0
votes
2
replies
2.4k
views
Differential quantification of splice junction
dexseq RNA-Seq
updated 14 months ago by 43k • written 9.0 years ago by ▴ 90
0
votes
1
reply
2.9k
views
How to count novel and known splice junction reads from BAM
RNA-Seq
updated 14 months ago by 43k • written 9.0 years ago by ▴ 90
1
vote
0
replies
4.7k
views
Tool: rMATS: quantification of differential splicing
RNA-Seq
updated 14 months ago by 43k • written 9.0 years ago by ▴ 90
0
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1
reply
5.1k
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Answer: A: Can I Pre-Build The Shared Transcriptome Index For A Series Of Tophat Runs?
9.3 years ago by Anil Kesarwani ▴ 90
1
vote
0
replies
2.8k
views
How does MISO quantify genes with single isoform
RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 90
1
vote
2
replies
2.2k
views
Quantitative anlysis of alternative splicing events
RNA-Seq
updated 9 months ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
3.9k
views
Comment: Comment: How to run MISO with ENSEMBL GTF if reads were aligned against UCSC genome
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
3.9k
views
Comment: Comment: How to run MISO with ENSEMBL GTF if reads were aligned against UCSC genome
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
2.8k
views
Comment: Comment: How does the insert size parameter change after trimming (MATS tool)
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
2.8k
views
Comment: Comment: How does the insert size parameter change after trimming (MATS tool)
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
3
votes
3
replies
2.8k
views
How does the insert size parameter change after trimming (MATS tool)
RNA-Seq
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
1
reply
62k
views
Comment: Comment: Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
3.2k
views
Comment: Comment: tool to reorder mate reads after preprocessing
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
0
votes
0
replies
3.2k
views
Comment: Comment: tool to reorder mate reads after preprocessing
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 90
2
votes
5
replies
3.2k
views
Tool: tool to reorder mate reads after preprocessing
RNA-Seq
updated 9 months ago by 43k • written 9.6 years ago by ▴ 90
5
votes
2
replies
3.1k
views
Extraction of splicing events and their quantification
cuffdiff RNA-Seq
updated 9 months ago by 43k • written 9.6 years ago by ▴ 90
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