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0
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0
replies
6.6k
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Comment:
Comment: GATK genomicsDBimport intervals for WGS
3 days ago by
Sd
• 0
0
votes
0
replies
397
views
Comment:
Comment: How to slice a gvcf file with tabix?
12 days ago by
Sd
• 0
0
votes
1
reply
397
views
Comment:
Comment: How to slice a gvcf file with tabix?
13 days ago by
Sd
• 0
0
votes
1
reply
397
views
Comment:
Comment: How to slice a gvcf file with tabix?
13 days ago by
Sd
• 0
0
votes
6
replies
397
views
How to slice a gvcf file with tabix?
Tabix
bed
gvcf
12 days ago by
Sd
• 0
1
vote
2
replies
265
views
CombineGVCFs vs. MergeVcfs
CombineGVCFs
MergeVcfs
GATK
WGS
GVCF
updated 19 days ago by
Jeremy Leipzig
22k • written 20 days ago by
Sd
• 0
0
votes
1
reply
272
views
How to calculate depth of coverage and applying read depth filter
Depth-of-Coverage
CRAM
WGS
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
Sd
• 0
0
votes
0
replies
478
views
Comment:
Comment: CollectVariantCallingMetrics Error
9 weeks ago by
Sd
• 0
0
votes
1
reply
478
views
Comment:
Comment: CollectVariantCallingMetrics Error
9 weeks ago by
Sd
• 0
0
votes
5
replies
478
views
CollectVariantCallingMetrics Error
CollectVariantCallingMetrics
GATK
GVCF
9 weeks ago by
Sd
• 0
0
votes
0
replies
907
views
Comment:
Comment: Individual vs. joint call VCFs
4 months ago by
Sd
• 0
0
votes
1
reply
907
views
Comment:
Comment: Individual vs. joint call VCFs
4 months ago by
Sd
• 0
5
votes
7
replies
907
views
Individual vs. joint call VCFs
GATK
VCF
WGS
updated 4 months ago by
Brian Bushnell
20k • written 4 months ago by
Sd
• 0
2
votes
14
replies
1.4k
views
How to slice a CRAM file into the 50kb regions padded with 1kb?
GATK
BED
CRAM
WGS
updated 5 months ago by
ATpoint
82k • written 6 months ago by
Sd
• 0
0
votes
1
reply
1.4k
views
Answer:
Answer: How to slice a CRAM file into the 50kb regions padded with 1kb?
5 months ago by
Sd
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: How to slice a CRAM file into the 50kb regions padded with 1kb?
5 months ago by
Sd
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: How to slice a CRAM file into the 50kb regions padded with 1kb?
5 months ago by
Sd
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: How to slice a CRAM file into the 50kb regions padded with 1kb?
5 months ago by
Sd
• 0
0
votes
2
replies
1.4k
views
Comment:
Comment: How to slice a CRAM file into the 50kb regions padded with 1kb?
5 months ago by
Sd
• 0
0
votes
1
reply
297
views
Does GATK SetNmMdAndUqTags reduces the size of a CRAM?
CRAM
WGS
sam
GATK
SetNmMdAndUqTags
updated 6 months ago by
Pierre Lindenbaum
161k • written 6 months ago by
Sd
• 0
3
votes
1
reply
431
views
How to BLAST a FASTA sequence with unknown organism source
chrZ
BLAST
FASTA
updated 7 months ago by
Joe
21k • written 7 months ago by
Sd
• 0
2
votes
3
replies
711
views
Hwo to identify that BQSR is performed on CRAM file
Illumina
GATK
WGS
sequencing
BQSR
updated 9 months ago by
raphael.B
▴ 520 • written 9 months ago by
Sd
• 0
0
votes
1
reply
711
views
Comment:
Comment: Hwo to identify that BQSR is performed on CRAM file
9 months ago by
Sd
• 0
5
votes
4
replies
762
views
How to Split 3000 WGS CRAM files into 1Mbp length chunks
CRAM
updated 11 months ago by
cmdcolin
★ 3.8k • written 11 months ago by
Sd
• 0
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