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2
votes
1
reply
337
views
What is trait discoverability?
snp phenotype gene trait
updated 5 months ago by 149k • written 5 months ago by ▴ 60
0
votes
1
reply
487
views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated 7 months ago by 11k • written 7 months ago by ▴ 60
2
votes
1
reply
353
views
Filter vcf file by position AND alternative allele
bcftools vcf filter
updated 7 months ago by 12k • written 7 months ago by ▴ 60
1
vote
5
replies
1.1k
views
Get position in GRCh38 from rsid
snp rsid location
updated 7 months ago by 8.8k • written 7 months ago by ▴ 60
0
votes
3
replies
588
views
Fastest way to get rsid from SNP position
snp dbsnp annotation
updated 8 months ago by 165k • written 8 months ago by ▴ 60
3
votes
4
replies
690
views
Where can I download dbsnp in hg19?
dnsnp hg19
8 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
400
views
Detecting compound heterozygous
haplotype heterozygous
8 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
307
views
Good books or review papers on mendelian randomization and eQTLs?
eQTL randomization mendelian
8 months ago by _quantum_girl_ ▴ 60
9
votes
9
replies
1.2k
views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated 8 months ago by 165k • written 8 months ago by ▴ 60
8
votes
6
replies
1.4k
views
Why is UCSC lift over failing to convert a specific position?
UCSC liftover
updated 8 months ago by ▴ 600 • written 8 months ago by ▴ 60
0
votes
2
replies
728
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control SNV QC SNP
11 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
232
views
Databases with GoF (Gain of Function) annotations.
gof lof gain-of-function
11 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
854
views
How to choose --hwe threshold?
plink hardy-weinberg quality-control qc
13 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
870
views
What do HAP A1 and HAP A2 mean in plink --freqx output?
plink
updated 17 months ago by ★ 3.0k • written 17 months ago by ▴ 60
0
votes
0
replies
451
views
Regenie to get burden
Regenie
updated 17 months ago by 45k • written 17 months ago by ▴ 60
5
votes
3
replies
921
views
Where to find info on VCF file format?
bcftools vcf
updated 17 months ago by 45k • written 17 months ago by ▴ 60
2
votes
4
replies
2.4k
views
How to filter vcf file by MAF using bcftools?
bcftools vcf
updated 17 months ago by 45k • written 17 months ago by ▴ 60
3
votes
4
replies
849
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus applet
updated 17 months ago by 4.9k • written 17 months ago by ▴ 60
3
votes
2
replies
816
views
How to retrieve LoF and missense variants in WES data?
bcftools variants plink SNPs
updated 18 months ago by ▴ 130 • written 18 months ago by ▴ 60
1
vote
1
reply
786
views
Any online course for learning how to use PLINK?
plink
updated 18 months ago by ★ 3.0k • written 18 months ago by ▴ 60
3
votes
3
replies
1.0k
views
How to find variants in a specific gene in a cohort of 500k+ individuals?
variants plink SNPs CNV
updated 18 months ago by 165k • written 18 months ago by ▴ 60
0
votes
0
replies
395
views
How to find commutation using plink?
commutation plink
18 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
394
views
Methylation (Illumina arrays or Whole-genome bisulfite sequencing WBS) and WGS datasets?
array wgs methylation wbs dna
21 months ago by _quantum_girl_ ▴ 60
23 results • Page 1 of 1
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