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2
votes
1
reply
236
views
What is trait discoverability?
snp phenotype gene trait
updated 5 weeks ago by 147k • written 5 weeks ago by ▴ 60
0
votes
1
reply
320
views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated 3 months ago by 11k • written 3 months ago by ▴ 60
0
votes
1
reply
6.1k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
3 months ago by _quantum_girl_ ▴ 60
0
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1
reply
6.1k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
3 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
541
views
Comment: Comment: Get position in GRCh38 from rsid
3 months ago by _quantum_girl_ ▴ 60
0
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1
reply
541
views
Comment: Comment: Get position in GRCh38 from rsid
3 months ago by _quantum_girl_ ▴ 60
0
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1
reply
13k
views
Comment: Comment: Get Snp Position From A Python Interface.
3 months ago by _quantum_girl_ ▴ 60
2
votes
1
reply
232
views
Filter vcf file by position AND alternative allele
bcftools vcf filter
updated 3 months ago by 12k • written 3 months ago by ▴ 60
1
vote
5
replies
541
views
Get position in GRCh38 from rsid
snp rsid location
updated 3 months ago by 8.7k • written 3 months ago by ▴ 60
0
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0
replies
368
views
Comment: Comment: Fastest way to get rsid from SNP position
4 months ago by _quantum_girl_ ▴ 60
0
votes
3
replies
368
views
Fastest way to get rsid from SNP position
snp dbsnp annotation
updated 4 months ago by 164k • written 4 months ago by ▴ 60
0
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0
replies
451
views
Comment: Comment: Where can I download dbsnp in hg19?
4 months ago by _quantum_girl_ ▴ 60
0
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1
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451
views
Comment: Comment: Where can I download dbsnp in hg19?
4 months ago by _quantum_girl_ ▴ 60
3
votes
4
replies
451
views
Where can I download dbsnp in hg19?
dnsnp hg19
4 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
271
views
Comment: Comment: Detecting compound heterozygous
4 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
271
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Detecting compound heterozygous
haplotype heterozygous
4 months ago by _quantum_girl_ ▴ 60
0
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0
replies
230
views
Good books or review papers on mendelian randomization and eQTLs?
eQTL randomization mendelian
4 months ago by _quantum_girl_ ▴ 60
0
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1
reply
801
views
Comment: Comment: How to get gene name for 900k SNPs
4 months ago by _quantum_girl_ ▴ 60
0
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1
reply
801
views
Comment: Comment: How to get gene name for 900k SNPs
4 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
801
views
Comment: Comment: How to get gene name for 900k SNPs
4 months ago by _quantum_girl_ ▴ 60
9
votes
9
replies
801
views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated 4 months ago by 164k • written 4 months ago by ▴ 60
1
vote
0
replies
801
views
Answer: Answer: How to get gene name for 900k SNPs
4 months ago by _quantum_girl_ ▴ 60
8
votes
6
replies
887
views
Why is UCSC lift over failing to convert a specific position?
UCSC liftover
updated 4 months ago by ▴ 560 • written 4 months ago by ▴ 60
0
votes
0
replies
606
views
Comment: Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
6 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
606
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control SNV QC SNP
6 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
177
views
Databases with GoF (Gain of Function) annotations.
gof lof gain-of-function
7 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
667
views
Comment: Comment: How to choose --hwe threshold?
9 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
667
views
How to choose --hwe threshold?
plink hardy-weinberg quality-control qc
9 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
709
views
What do HAP A1 and HAP A2 mean in plink --freqx output?
plink
updated 12 months ago by ★ 3.0k • written 12 months ago by ▴ 60
0
votes
0
replies
378
views
Regenie to get burden
Regenie
updated 12 months ago by 44k • written 12 months ago by ▴ 60
5
votes
3
replies
724
views
Where to find info on VCF file format?
bcftools vcf
updated 13 months ago by 44k • written 13 months ago by ▴ 60
0
votes
1
reply
1.8k
views
Comment: Comment: How to filter vcf file by MAF using bcftools?
13 months ago by _quantum_girl_ ▴ 60
2
votes
4
replies
1.8k
views
How to filter vcf file by MAF using bcftools?
bcftools vcf
updated 13 months ago by 44k • written 13 months ago by ▴ 60
3
votes
4
replies
716
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus applet
updated 13 months ago by 4.4k • written 13 months ago by ▴ 60
3
votes
2
replies
661
views
How to retrieve LoF and missense variants in WES data?
bcftools variants plink SNPs
updated 13 months ago by ▴ 130 • written 13 months ago by ▴ 60
1
vote
1
reply
641
views
Any online course for learning how to use PLINK?
plink
updated 14 months ago by ★ 3.0k • written 14 months ago by ▴ 60
3
votes
3
replies
880
views
How to find variants in a specific gene in a cohort of 500k+ individuals?
variants plink SNPs CNV
updated 14 months ago by 164k • written 14 months ago by ▴ 60
0
votes
0
replies
343
views
How to find commutation using plink?
commutation plink
14 months ago by _quantum_girl_ ▴ 60
0
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0
replies
5.3k
views
Comment: Comment: From Imputed Snps To Cnvs
17 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
344
views
Methylation (Illumina arrays or Whole-genome bisulfite sequencing WBS) and WGS datasets?
array wgs methylation wbs dna
17 months ago by _quantum_girl_ ▴ 60
40 results • Page 1 of 1
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