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2
votes
1
reply
555
views
What is trait discoverability?
snp phenotype gene trait
updated 13 months ago by 154k • written 13 months ago by ▴ 60
0
votes
1
reply
840
views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated 15 months ago by 11k • written 15 months ago by ▴ 60
0
votes
1
reply
8.3k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
15 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
8.3k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
15 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
3.9k
views
Comment: Comment: Get position in GRCh38 from rsid
15 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
3.9k
views
Comment: Comment: Get position in GRCh38 from rsid
15 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
14k
views
Comment: Comment: Get Snp Position From A Python Interface.
15 months ago by _quantum_girl_ ▴ 60
2
votes
1
reply
620
views
Filter vcf file by position AND alternative allele
bcftools vcf filter
updated 15 months ago by 12k • written 15 months ago by ▴ 60
1
vote
5
replies
3.9k
views
Get position in GRCh38 from rsid
snp rsid location
updated 15 months ago by 8.9k • written 15 months ago by ▴ 60
0
votes
0
replies
916
views
Comment: Comment: Fastest way to get rsid from SNP position
16 months ago by _quantum_girl_ ▴ 60
0
votes
3
replies
916
views
Fastest way to get rsid from SNP position
snp dbsnp annotation
updated 16 months ago by 166k • written 16 months ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: Comment: Where can I download dbsnp in hg19?
16 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Where can I download dbsnp in hg19?
16 months ago by _quantum_girl_ ▴ 60
3
votes
4
replies
1.2k
views
Where can I download dbsnp in hg19?
dnsnp hg19
16 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
674
views
Comment: Comment: Detecting compound heterozygous
16 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
674
views
Detecting compound heterozygous
haplotype heterozygous
16 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
447
views
Good books or review papers on mendelian randomization and eQTLs?
eQTL randomization mendelian
16 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
1.7k
views
Comment: Comment: How to get gene name for 900k SNPs
16 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
1.7k
views
Comment: Comment: How to get gene name for 900k SNPs
16 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
1.7k
views
Comment: Comment: How to get gene name for 900k SNPs
16 months ago by _quantum_girl_ ▴ 60
9
votes
9
replies
1.7k
views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated 16 months ago by 166k • written 16 months ago by ▴ 60
1
vote
0
replies
1.7k
views
Answer: Answer: How to get gene name for 900k SNPs
16 months ago by _quantum_girl_ ▴ 60
9
votes
6
replies
3.0k
views
Why is UCSC lift over failing to convert a specific position?
UCSC liftover
updated 12 weeks ago by ★ 4.4k • written 16 months ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
18 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
1.0k
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control SNV QC SNP
18 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
374
views
Databases with GoF (Gain of Function) annotations.
gof lof gain-of-function
18 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
1.2k
views
Comment: Comment: How to choose --hwe threshold?
21 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
1.2k
views
How to choose --hwe threshold?
plink hardy-weinberg quality-control qc
21 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
1.3k
views
What do HAP A1 and HAP A2 mean in plink --freqx output?
plink
updated 2.0 years ago by ★ 3.1k • written 2.0 years ago by ▴ 60
0
votes
0
replies
596
views
Regenie to get burden
Regenie
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 60
5
votes
3
replies
1.4k
views
Where to find info on VCF file format?
bcftools vcf
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 60
0
votes
1
reply
3.3k
views
Comment: Comment: How to filter vcf file by MAF using bcftools?
2.1 years ago by _quantum_girl_ ▴ 60
2
votes
4
replies
3.3k
views
How to filter vcf file by MAF using bcftools?
bcftools vcf
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 60
3
votes
4
replies
1.2k
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus applet
updated 2.1 years ago by 5.1k • written 2.1 years ago by ▴ 60
3
votes
2
replies
1.1k
views
How to retrieve LoF and missense variants in WES data?
bcftools variants plink SNPs
updated 2.1 years ago by ▴ 130 • written 2.1 years ago by ▴ 60
1
vote
1
reply
1.0k
views
Any online course for learning how to use PLINK?
plink
updated 2.2 years ago by ★ 3.1k • written 2.2 years ago by ▴ 60
3
votes
3
replies
1.4k
views
How to find variants in a specific gene in a cohort of 500k+ individuals?
variants plink SNPs CNV
updated 2.2 years ago by 166k • written 2.2 years ago by ▴ 60
0
votes
0
replies
509
views
How to find commutation using plink?
commutation plink
2.2 years ago by _quantum_girl_ ▴ 60
0
votes
0
replies
5.9k
views
Comment: Comment: From Imputed Snps To Cnvs
2.4 years ago by _quantum_girl_ ▴ 60
0
votes
0
replies
512
views
Methylation (Illumina arrays or Whole-genome bisulfite sequencing WBS) and WGS datasets?
array wgs methylation wbs dna
2.4 years ago by _quantum_girl_ ▴ 60
40 results • Page 1 of 1
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