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questions
0
votes
0
replies
561
views
How to convert TreeMix newick output graph to dot format?
treemix
GRoSS
admixtools
Newick
dot
23 months ago by
eyb
▴ 250
2
votes
2
replies
2.9k
views
How to convert plink data from 38th assembly to 37
assembly
SNP
plink
liftOver
genome
updated 2.6 years ago by
wenbinm
▴ 40 • written 3.1 years ago by
eyb
▴ 250
3
votes
5
replies
3.7k
views
How to extract a subset of samples from plink .bed files
plink
ped
bed
3.6 years ago by
eyb
▴ 250
6
votes
5
replies
7.8k
views
Beagle imputation results quality control
imputation
beagle
vcf
updated 4.2 years ago by
zx8754
11k • written 8.8 years ago by
eyb
▴ 250
0
votes
4
replies
2.9k
views
Need R help (fdrtool, PatternCNV)
R
PatternCNV
CNV
fdrtool
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
eyb
▴ 250
1
vote
0
replies
1.8k
views
What is the easiest way to add gene annotation on X axis?
snp
annotation
plotting
7.4 years ago by
eyb
▴ 250
2
votes
6
replies
2.6k
views
Do I have to look for sequence or reverse complement?
sequence
BioPython
updated 7.4 years ago by
william.bill.langdon
▴ 30 • written 7.4 years ago by
eyb
▴ 250
4
votes
1
reply
4.1k
views
How to standardize iHS, NSL and XP-EHH scores
selection
SNP
updated 7.7 years ago by
patel.ravip
▴ 60 • written 7.7 years ago by
eyb
▴ 250
0
votes
0
replies
2.0k
views
Genome STRiP execution time
Genome-STRiP
runtime
1000genomes
GATK
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
eyb
▴ 250
5
votes
4
replies
4.1k
views
Sequence alignment in biopython
biopython
sequence
updated 7.8 years ago by
Biostar
20 • written 7.9 years ago by
eyb
▴ 250
17
votes
6
replies
11k
views
How to interpret XPEHH (recent selection) score?
selection
selscan
updated 8.4 years ago by
Giovanni M Dall'Olio
28k • written 8.4 years ago by
eyb
▴ 250
2
votes
0
replies
1.5k
views
Is it better to phase two populations together or separately?
phasing
beagle
populations
updated 8.4 years ago by
Giovanni M Dall'Olio
28k • written 8.5 years ago by
eyb
▴ 250
0
votes
0
replies
3.6k
views
How to create reference allele file in plink? (~50 SNPs)
plink
impute2
updated 16 months ago by
Ram
43k • written 8.8 years ago by
eyb
▴ 250
0
votes
0
replies
1.9k
views
ped to HGDP format conversion
HGDP
PED
9.0 years ago by
eyb
▴ 250
10
votes
14
replies
4.8k
views
bam file assembly (1000 genomes)
1000 genomes
Assembly
alignment
primer
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
eyb
▴ 250
8
votes
24
replies
6.6k
views
Selection detection software
selection
SNP
updated 3.1 years ago by
Ram
43k • written 9.6 years ago by
eyb
▴ 250
3
votes
2
replies
2.3k
views
Looking for a deletion in 1000 genomes
deletion
1000genomes
CNV
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
eyb
▴ 250
6
votes
4
replies
2.1k
views
How does SNP position numeration work?
position
bp
SNP
updated 3.1 years ago by
Ram
43k • written 9.6 years ago by
eyb
▴ 250
6
votes
6
replies
1.9k
views
How to match filenames in different directories?(bash or python)
Unix
Linux
Python
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
eyb
▴ 250
8
votes
4
replies
3.3k
views
Is there a way to phase an unphased data for selection detection?
snp
PED
phase
unphased
selection
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
eyb
▴ 250
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