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comments
0
votes
0
replies
348
views
Comment:
Comment: BUSCO did not find any match. Retraining did not complete correctly. BUSCO analy
10 weeks ago by
Sony
▴ 10
0
votes
2
replies
348
views
BUSCO did not find any match. Retraining did not complete correctly. BUSCO analysis failed!
Augustus
pipeline
MAKER
annotation
BUSCO
updated 10 weeks ago by
GenoMax
145k • written 10 weeks ago by
Sony
▴ 10
0
votes
0
replies
615
views
ERROR with Maker annotation: The assumed RepeatMasker installation directory /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not ap…
RepeatMasker.
MAKER.
annotation.
3 months ago by
Sony
▴ 10
1
vote
2
replies
321
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 4 months ago by
Ram
44k • written 4 months ago by
Sony
▴ 10
0
votes
1
reply
498
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 4 months ago by
GenoMax
145k • written 4 months ago by
Sony
▴ 10
2
votes
4
replies
715
views
Which command ro run MAKER pipeline for gene annotation ?
run.
command
to
MAKERpipeline.
updated 5 months ago by
GenoMax
145k • written 5 months ago by
Sony
▴ 10
0
votes
2
replies
715
views
Comment:
Comment: Which command ro run MAKER pipeline for gene annotation ?
5 months ago by
Sony
▴ 10
0
votes
1
reply
651
views
Comment:
Comment: How to download large-scale cDNA sequences from NCBI effectively ?
5 months ago by
Sony
▴ 10
3
votes
4
replies
651
views
How to download large-scale cDNA sequences from NCBI effectively ?
NCBI.
cDNA
updated 5 months ago by
Pierre Lindenbaum
163k • written 5 months ago by
Sony
▴ 10
0
votes
5
replies
545
views
BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to solve this problem ?
duplicate
BUSCO.
updated 5 months ago by
GenoMax
145k • written 5 months ago by
Sony
▴ 10
0
votes
1
reply
545
views
Comment:
Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
5 months ago by
Sony
▴ 10
0
votes
0
replies
545
views
Comment:
Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
5 months ago by
Sony
▴ 10
0
votes
1
reply
291
views
How to perform GO enrichment analysis for assembled sequence ?
GO-enrichment
Gene-Ontology
updated 5 months ago by
Ram
44k • written 5 months ago by
Sony
▴ 10
1
vote
3
replies
563
views
How to validate the assembly completeness of unaligned reads ?
MaSuRCA
SPAdes
updated 6 months ago by
GenoMax
145k • written 6 months ago by
Sony
▴ 10
0
votes
1
reply
563
views
Comment:
Comment: How to validate the assembly completeness of unaligned reads ?
6 months ago by
Sony
▴ 10
0
votes
0
replies
212
views
compare the assembler MaSuRCA and SPAdes for assembly unmapped reads
SPAdes
unmapped_reads.
assembly.
MaSuRCA.
6 months ago by
Sony
▴ 10
2
votes
3
replies
620
views
How to download all expressed sequence tags (ESTs) for particular species from NCBI using command ?
NCBI
EST
updated 6 months ago by
GenoMax
145k • written 6 months ago by
Sony
▴ 10
0
votes
1
reply
620
views
Comment:
Comment: How to download all expressed sequence tags (ESTs) for particular species from N
6 months ago by
Sony
▴ 10
0
votes
1
reply
376
views
Validate the assembly of unmapped reads by remapping the original reads back to the assembled sequence
unmapped_reads.
assembly.
Paired-end_reads
updated 6 months ago by
GenoMax
145k • written 6 months ago by
Sony
▴ 10
1
vote
5
replies
821
views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
MaSuRCA
insert-size
assembly
updated 7 months ago by
Ram
44k • written 7 months ago by
Sony
▴ 10
0
votes
1
reply
821
views
Comment:
Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
7 months ago by
Sony
▴ 10
0
votes
1
reply
821
views
Comment:
Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
updated 7 months ago by
GenoMax
145k • written 7 months ago by
Sony
▴ 10
0
votes
0
replies
715
views
Comment:
Comment: How to assess the quality of the assembly of unmapped reads ?
7 months ago by
Sony
▴ 10
0
votes
0
replies
715
views
Comment:
Comment: How to assess the quality of the assembly of unmapped reads ?
7 months ago by
Sony
▴ 10
1
vote
0
replies
715
views
Comment:
Comment: How to assess the quality of the assembly of unmapped reads ?
7 months ago by
Sony
▴ 10
3
votes
5
replies
715
views
How to assess the quality of the assembly of unmapped reads ?
Pangenome
Iterative-assembly
7 months ago by
Sony
▴ 10
8
votes
3
replies
657
views
How to construct a blast database for non-green plant species and fungi
blast
updated 8 months ago by
GenoMax
145k • written 8 months ago by
Sony
▴ 10
8
votes
12
replies
1.9k
views
download BLAST NCBI nt database
blast
nt
updated 8 months ago by
PeterC_NCBI
▴ 510 • written 8 months ago by
Sony
▴ 10
0
votes
1
reply
1.9k
views
Comment:
Comment: download BLAST NCBI nt database
8 months ago by
Sony
▴ 10
0
votes
1
reply
1.9k
views
Comment:
Comment: download BLAST NCBI nt database
8 months ago by
Sony
▴ 10
0
votes
1
reply
1.9k
views
Comment:
Comment: download BLAST NCBI nt database
8 months ago by
Sony
▴ 10
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