Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.6k
views
Comment: Comment: Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-
5 weeks ago by Sony Nguyen ▴ 20
1
vote
3
replies
1.6k
views
Constructing a bread wheat pangenome graph using PGGB: per-chromosome vs. whole-genome approach and integration of assemblies from different sequenci…
pangenome structural-variation bread-wheat PGGB
updated 5 weeks ago by ▴ 640 • written 5 weeks ago by ▴ 20
1
vote
8
replies
2.5k
views
Tools for Subsampling Paired-End Reads to 25X Coverage ?
paired-end fastq depth sequencing coverage
updated 11 months ago by ★ 30k • written 11 months ago by ▴ 20
0
votes
1
reply
2.5k
views
Comment: Comment: Tools for Subsampling Paired-End Reads to 25X Coverage ?
11 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
804
views
Comment: Comment: linear pangenome for crops
11 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
3.4k
views
Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
11 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
730
views
How to compare and complement the missing gene and feature in gff3 file base on available gff3 reference ?
gff3 IRGSP1.0 MAKER
updated 12 months ago by 16k • written 12 months ago by ▴ 20
0
votes
1
reply
3.4k
views
Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
12 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
1.5k
views
Comment: Comment: How to filter and keep longest isoform per gene in gff3 file ?
12 months ago by Sony Nguyen ▴ 20
3
votes
3
replies
1.5k
views
How to filter and keep longest isoform per gene in gff3 file ?
gff isoform maker annotation
12 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
458
views
How to extract the missing feature ( gene, CDS, ... when compare 2 gff3 file ?
gff3 compare MAKER annotation RAP-DB
13 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
1.1k
views
Comment: Comment: BUSCO did not find any match. Retraining did not complete correctly. BUSCO analy
16 months ago by Sony Nguyen ▴ 20
0
votes
2
replies
1.1k
views
BUSCO did not find any match. Retraining did not complete correctly. BUSCO analysis failed!
Augustus pipeline MAKER annotation BUSCO
updated 16 months ago by 154k • written 16 months ago by ▴ 20
0
votes
0
replies
965
views
ERROR with Maker annotation: The assumed RepeatMasker installation directory /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not ap…
RepeatMasker. MAKER. annotation.
18 months ago by Sony Nguyen ▴ 20
1
vote
2
replies
779
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 18 months ago by 45k • written 18 months ago by ▴ 20
0
votes
1
reply
1.3k
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort. SAMtools. BAM. SAM.
updated 19 months ago by 154k • written 19 months ago by ▴ 20
2
votes
4
replies
1.9k
views
Which command ro run MAKER pipeline for gene annotation ?
run. command to MAKERpipeline.
updated 19 months ago by 154k • written 19 months ago by ▴ 20
0
votes
2
replies
1.9k
views
Comment: Comment: Which command ro run MAKER pipeline for gene annotation ?
19 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: How to download large-scale cDNA sequences from NCBI effectively ?
19 months ago by Sony Nguyen ▴ 20
3
votes
4
replies
1.7k
views
How to download large-scale cDNA sequences from NCBI effectively ?
NCBI. cDNA
updated 19 months ago by 166k • written 19 months ago by ▴ 20
0
votes
5
replies
1.5k
views
BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to solve this problem ?
duplicate BUSCO.
updated 20 months ago by 154k • written 20 months ago by ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
20 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
1.5k
views
Comment: Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
20 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
773
views
How to perform GO enrichment analysis for assembled sequence ?
GO-enrichment Gene-Ontology
updated 20 months ago by 45k • written 20 months ago by ▴ 20
1
vote
3
replies
1.2k
views
How to validate the assembly completeness of unaligned reads ?
MaSuRCA SPAdes
updated 20 months ago by 154k • written 20 months ago by ▴ 20
0
votes
1
reply
1.2k
views
Comment: Comment: How to validate the assembly completeness of unaligned reads ?
20 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
492
views
compare the assembler MaSuRCA and SPAdes for assembly unmapped reads
SPAdes unmapped_reads. assembly. MaSuRCA.
20 months ago by Sony Nguyen ▴ 20
2
votes
3
replies
1.3k
views
How to download all expressed sequence tags (ESTs) for particular species from NCBI using command ?
NCBI EST
updated 21 months ago by 154k • written 21 months ago by ▴ 20
0
votes
1
reply
1.3k
views
Comment: Comment: How to download all expressed sequence tags (ESTs) for particular species from N
21 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
733
views
Validate the assembly of unmapped reads by remapping the original reads back to the assembled sequence
unmapped_reads. assembly. Paired-end_reads
updated 21 months ago by 154k • written 21 months ago by ▴ 20
1
vote
5
replies
1.5k
views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
MaSuRCA insert-size assembly
updated 21 months ago by 45k • written 21 months ago by ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
21 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
updated 21 months ago by 154k • written 21 months ago by ▴ 20
0
votes
0
replies
1.3k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
22 months ago by Sony Nguyen ▴ 20
0
votes
0
replies
1.3k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
22 months ago by Sony Nguyen ▴ 20
1
vote
0
replies
1.3k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
22 months ago by Sony Nguyen ▴ 20
3
votes
5
replies
1.3k
views
How to assess the quality of the assembly of unmapped reads ?
Pangenome Iterative-assembly
22 months ago by Sony Nguyen ▴ 20
8
votes
3
replies
1.5k
views
How to construct a blast database for non-green plant species and fungi
blast
updated 22 months ago by 154k • written 22 months ago by ▴ 20
8
votes
12
replies
4.5k
views
download BLAST NCBI nt database
blast nt
updated 22 months ago by ▴ 520 • written 23 months ago by ▴ 20
0
votes
1
reply
4.5k
views
Comment: Comment: download BLAST NCBI nt database
22 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
4.5k
views
Comment: Comment: download BLAST NCBI nt database
23 months ago by Sony Nguyen ▴ 20
0
votes
1
reply
4.5k
views
Comment: Comment: download BLAST NCBI nt database
23 months ago by Sony Nguyen ▴ 20
42 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6