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1
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8
replies
2.2k
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Tools for Subsampling Paired-End Reads to 25X Coverage ?
paired-end fastq depth sequencing coverage
updated 10 months ago by ★ 30k • written 10 months ago by ▴ 20
0
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1
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2.2k
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Comment: Comment: Tools for Subsampling Paired-End Reads to 25X Coverage ?
10 months ago by Sony ▴ 20
0
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0
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714
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Comment: Comment: linear pangenome for crops
10 months ago by Sony ▴ 20
0
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0
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3.1k
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
10 months ago by Sony ▴ 20
0
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1
reply
572
views
How to compare and complement the missing gene and feature in gff3 file base on available gff3 reference ?
gff3 IRGSP1.0 MAKER
updated 10 months ago by 16k • written 10 months ago by ▴ 20
0
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1
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3.1k
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Comment: Comment: The BUSCO assessment of the MAKER annotation results shows a low completeness
10 months ago by Sony ▴ 20
0
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0
replies
1.3k
views
Comment: Comment: How to filter and keep longest isoform per gene in gff3 file ?
10 months ago by Sony ▴ 20
3
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3
replies
1.3k
views
How to filter and keep longest isoform per gene in gff3 file ?
gff isoform maker annotation
10 months ago by Sony ▴ 20
0
votes
0
replies
405
views
How to extract the missing feature ( gene, CDS, ... when compare 2 gff3 file ?
gff3 compare MAKER annotation RAP-DB
11 months ago by Sony ▴ 20
0
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0
replies
957
views
Comment: Comment: BUSCO did not find any match. Retraining did not complete correctly. BUSCO analy
15 months ago by Sony ▴ 20
0
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2
replies
957
views
BUSCO did not find any match. Retraining did not complete correctly. BUSCO analysis failed!
Augustus pipeline MAKER annotation BUSCO
updated 15 months ago by 154k • written 15 months ago by ▴ 20
0
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0
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911
views
ERROR with Maker annotation: The assumed RepeatMasker installation directory /opt/home/sony/miniconda3/envs/MAKER2/share/RepeatMasker does not ap…
RepeatMasker. MAKER. annotation.
16 months ago by Sony ▴ 20
1
vote
2
replies
722
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 16 months ago by 45k • written 17 months ago by ▴ 20
0
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1
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1.2k
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort. SAMtools. BAM. SAM.
updated 17 months ago by 154k • written 17 months ago by ▴ 20
2
votes
4
replies
1.7k
views
Which command ro run MAKER pipeline for gene annotation ?
run. command to MAKERpipeline.
updated 18 months ago by 154k • written 18 months ago by ▴ 20
0
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2
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1.7k
views
Comment: Comment: Which command ro run MAKER pipeline for gene annotation ?
18 months ago by Sony ▴ 20
0
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1
reply
1.5k
views
Comment: Comment: How to download large-scale cDNA sequences from NCBI effectively ?
18 months ago by Sony ▴ 20
3
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4
replies
1.5k
views
How to download large-scale cDNA sequences from NCBI effectively ?
NCBI. cDNA
updated 18 months ago by 166k • written 18 months ago by ▴ 20
0
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5
replies
1.4k
views
BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to solve this problem ?
duplicate BUSCO.
updated 18 months ago by 154k • written 18 months ago by ▴ 20
0
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1
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1.4k
views
Comment: Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
18 months ago by Sony ▴ 20
0
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0
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1.4k
views
Comment: Comment: BUSCO analysis failed due to Duplicate of sequence in Input genome fasta. How to
18 months ago by Sony ▴ 20
0
votes
1
reply
694
views
How to perform GO enrichment analysis for assembled sequence ?
GO-enrichment Gene-Ontology
updated 18 months ago by 45k • written 18 months ago by ▴ 20
1
vote
3
replies
1.1k
views
How to validate the assembly completeness of unaligned reads ?
MaSuRCA SPAdes
updated 19 months ago by 154k • written 19 months ago by ▴ 20
0
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1
reply
1.1k
views
Comment: Comment: How to validate the assembly completeness of unaligned reads ?
19 months ago by Sony ▴ 20
0
votes
0
replies
444
views
compare the assembler MaSuRCA and SPAdes for assembly unmapped reads
SPAdes unmapped_reads. assembly. MaSuRCA.
19 months ago by Sony ▴ 20
2
votes
3
replies
1.2k
views
How to download all expressed sequence tags (ESTs) for particular species from NCBI using command ?
NCBI EST
updated 19 months ago by 154k • written 19 months ago by ▴ 20
0
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1
reply
1.2k
views
Comment: Comment: How to download all expressed sequence tags (ESTs) for particular species from N
19 months ago by Sony ▴ 20
0
votes
1
reply
672
views
Validate the assembly of unmapped reads by remapping the original reads back to the assembled sequence
unmapped_reads. assembly. Paired-end_reads
updated 19 months ago by 154k • written 19 months ago by ▴ 20
1
vote
5
replies
1.4k
views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
MaSuRCA insert-size assembly
updated 20 months ago by 45k • written 20 months ago by ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
20 months ago by Sony ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: How to calculate insert size and Stdev of insert file for Configure file of MaS
updated 20 months ago by 154k • written 20 months ago by ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
20 months ago by Sony ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
20 months ago by Sony ▴ 20
1
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0
replies
1.2k
views
Comment: Comment: How to assess the quality of the assembly of unmapped reads ?
20 months ago by Sony ▴ 20
3
votes
5
replies
1.2k
views
How to assess the quality of the assembly of unmapped reads ?
Pangenome Iterative-assembly
20 months ago by Sony ▴ 20
8
votes
3
replies
1.4k
views
How to construct a blast database for non-green plant species and fungi
blast
updated 21 months ago by 154k • written 21 months ago by ▴ 20
8
votes
12
replies
4.2k
views
download BLAST NCBI nt database
blast nt
updated 21 months ago by ▴ 520 • written 21 months ago by ▴ 20
0
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1
reply
4.2k
views
Comment: Comment: download BLAST NCBI nt database
21 months ago by Sony ▴ 20
0
votes
1
reply
4.2k
views
Comment: Comment: download BLAST NCBI nt database
21 months ago by Sony ▴ 20
0
votes
1
reply
4.2k
views
Comment: Comment: download BLAST NCBI nt database
21 months ago by Sony ▴ 20
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