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217
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Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
5 weeks ago by CTLong ▴ 110
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0
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119
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WGCNA modulePreservation on three expression sets
WGCNA
6 weeks ago by CTLong ▴ 110
1
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0
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211
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Comment: Comment: Tool for gene function identification
6 weeks ago by CTLong ▴ 110
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255
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Comment: Comment: Gene set to perform GSVA
8 weeks ago by CTLong ▴ 110
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2
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254
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Gene set to perform GSVA
GSVA
8 weeks ago by CTLong ▴ 110
1
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1
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217
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ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
5 weeks ago by CTLong ▴ 110
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0
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26k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
10 weeks ago by CTLong ▴ 110
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0
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128
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Interpret ImpulseDE2 output?
RNA-seq
10 weeks ago by CTLong ▴ 110
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1
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509
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
11 weeks ago by CTLong ▴ 110
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3
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509
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Does the order of the batch variable matter in Limma design matrix?
Batch
updated 8 weeks ago by ★ 7.2k • written 11 weeks ago by ▴ 110
0
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1
reply
361
views
Speed up Seurat FindClusters execution?
Seurat
updated 11 weeks ago by 6.4k • written 12 weeks ago by ▴ 110
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1
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516
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Answer: Answer: Differential gene expression design using Deseq2
updated 3 months ago by 43k • written 3 months ago by ▴ 110
1
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1
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292
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Gene expression of microarray data
Microarray
updated 4 months ago by ★ 7.2k • written 4 months ago by ▴ 110
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482
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Answer: Answer: filtering lowly expressed reads
4 months ago by CTLong ▴ 110
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0
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439
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Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
4 months ago by CTLong ▴ 110
1
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3
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439
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Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
4 months ago by CTLong ▴ 110
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0
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279
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Answer: Answer: insilico prediction of disulfide bonds in protein
4 months ago by CTLong ▴ 110
1
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1
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514
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
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1
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514
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
2
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5
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514
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RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 4 months ago by ★ 1.4k • written 4 months ago by ▴ 110
0
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1
reply
568
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
4 months ago by CTLong ▴ 110
1
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3
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568
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Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 4 months ago by 82k • written 4 months ago by ▴ 110
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0
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560
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Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
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1
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560
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Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
2
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4
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560
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Obtain fitted data from DESeq2
DESeq2
4 months ago by CTLong ▴ 110
0
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0
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504
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Comment: Comment: STAR SjdbOverHang specification
5 months ago by CTLong ▴ 110
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1
reply
504
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Comment: Comment: STAR SjdbOverHang specification
5 months ago by CTLong ▴ 110
0
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3
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504
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STAR SjdbOverHang specification
STAR
5 months ago by CTLong ▴ 110
2
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0
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645
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Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
5 months ago by CTLong ▴ 110
1
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1
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9.2k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
5 months ago by CTLong ▴ 110
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1
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518
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Answer: Answer: Tutorials for Spatial Transcriptomics
5 months ago by CTLong ▴ 110
2
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1
reply
509
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 5 months ago by 43k • written 5 months ago by ▴ 110
0
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0
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578
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Comment: Comment: Best method for batch correction of three datasets
5 months ago by CTLong ▴ 110
2
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2
replies
578
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Best method for batch correction of three datasets
RNA-seq
updated 5 months ago by 82k • written 5 months ago by ▴ 110
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0
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881
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Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
3
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4
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663
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Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 110
0
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1
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881
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Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
0
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0
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727
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
0
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0
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727
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Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
4
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4
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727
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Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch correction
5 months ago by CTLong ▴ 110
0
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1
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663
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
5 months ago by CTLong ▴ 110
1
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0
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410
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Comment: Comment: Harmony integration PC variance explained
5 months ago by CTLong ▴ 110
0
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0
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614
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Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
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1
reply
614
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
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1
reply
614
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
1
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6
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614
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Discrepancy in total number of bases in trimmed read1 and read2 files after BBDuk
bbduk
5 months ago by CTLong ▴ 110
1
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0
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767
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Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
reply
767
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Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
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767
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Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
1
vote
6
replies
767
views
Parsing XML file from dbGaP
XML
6 months ago by CTLong ▴ 110
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