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207
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Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
24 days ago by CTLong ▴ 110
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0
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114
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WGCNA modulePreservation on three expression sets
WGCNA
5 weeks ago by CTLong ▴ 110
1
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0
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203
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Comment: Comment: Tool for gene function identification
5 weeks ago by CTLong ▴ 110
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0
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244
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Comment: Comment: Gene set to perform GSVA
7 weeks ago by CTLong ▴ 110
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2
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244
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Gene set to perform GSVA
GSVA
7 weeks ago by CTLong ▴ 110
1
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1
reply
207
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
24 days ago by CTLong ▴ 110
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0
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26k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
8 weeks ago by CTLong ▴ 110
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0
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122
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Interpret ImpulseDE2 output?
RNA-seq
9 weeks ago by CTLong ▴ 110
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1
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476
views
Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
9 weeks ago by CTLong ▴ 110
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3
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476
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Does the order of the batch variable matter in Limma design matrix?
Batch
updated 7 weeks ago by ★ 7.1k • written 10 weeks ago by ▴ 110
0
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1
reply
341
views
Speed up Seurat FindClusters execution?
Seurat
updated 10 weeks ago by 6.4k • written 10 weeks ago by ▴ 110
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1
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505
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Answer: Answer: Differential gene expression design using Deseq2
updated 3 months ago by 43k • written 3 months ago by ▴ 110
1
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1
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279
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Gene expression of microarray data
Microarray
updated 3 months ago by ★ 7.1k • written 3 months ago by ▴ 110
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0
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462
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Answer: Answer: filtering lowly expressed reads
3 months ago by CTLong ▴ 110
0
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0
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406
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Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
3 months ago by CTLong ▴ 110
1
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3
replies
406
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
3 months ago by CTLong ▴ 110
0
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0
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272
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Answer: Answer: insilico prediction of disulfide bonds in protein
4 months ago by CTLong ▴ 110
1
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1
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503
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
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1
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503
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
2
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5
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503
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RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 4 months ago by ★ 1.4k • written 4 months ago by ▴ 110
0
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1
reply
554
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
4 months ago by CTLong ▴ 110
1
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3
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554
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Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 4 months ago by 82k • written 4 months ago by ▴ 110
0
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0
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537
views
Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
0
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1
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537
views
Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
2
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4
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537
views
Obtain fitted data from DESeq2
DESeq2
4 months ago by CTLong ▴ 110
0
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0
replies
493
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Comment: Comment: STAR SjdbOverHang specification
4 months ago by CTLong ▴ 110
0
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1
reply
493
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Comment: Comment: STAR SjdbOverHang specification
4 months ago by CTLong ▴ 110
0
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3
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493
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STAR SjdbOverHang specification
STAR
4 months ago by CTLong ▴ 110
2
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0
replies
636
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Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
4 months ago by CTLong ▴ 110
1
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1
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9.1k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
4 months ago by CTLong ▴ 110
0
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1
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502
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Answer: Answer: Tutorials for Spatial Transcriptomics
5 months ago by CTLong ▴ 110
2
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1
reply
502
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 5 months ago by 43k • written 5 months ago by ▴ 110
0
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0
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567
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Comment: Comment: Best method for batch correction of three datasets
5 months ago by CTLong ▴ 110
2
votes
2
replies
567
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Best method for batch correction of three datasets
RNA-seq
updated 5 months ago by 82k • written 5 months ago by ▴ 110
0
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0
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854
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
3
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4
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638
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Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 110
0
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1
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854
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
0
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0
replies
705
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
0
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0
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705
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
4
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4
replies
705
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch correction
5 months ago by CTLong ▴ 110
0
votes
1
reply
638
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
5 months ago by CTLong ▴ 110
1
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0
replies
393
views
Comment: Comment: Harmony integration PC variance explained
5 months ago by CTLong ▴ 110
0
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0
replies
600
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
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1
reply
600
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
votes
1
reply
600
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
1
vote
6
replies
600
views
Discrepancy in total number of bases in trimmed read1 and read2 files after BBDuk
bbduk
5 months ago by CTLong ▴ 110
1
vote
0
replies
750
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
reply
750
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
reply
750
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
1
vote
6
replies
750
views
Parsing XML file from dbGaP
XML
6 months ago by CTLong ▴ 110
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