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789
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methRead takes too long
MethylKit
updated 7 months ago by ▴ 10 • written 15 months ago by ▴ 140
1
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6
replies
2.8k
views
Does the order of the batch variable matter in Limma design matrix?
Batch
updated 13 months ago by ★ 8.5k • written 20 months ago by ▴ 140
0
votes
0
replies
446
views
Should I plot with methylDiff or methylBase object?
MethylKit
14 months ago by CTLong ▴ 140
0
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0
replies
2.4k
views
Comment: Comment: Speed up Seurat FindClusters execution?
16 months ago by CTLong ▴ 140
0
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3
replies
2.4k
views
Speed up Seurat FindClusters execution?
Seurat
16 months ago by CTLong ▴ 140
1
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0
replies
1.0k
views
Comment: Comment: Fetch protein information of genes in a gene list
16 months ago by CTLong ▴ 140
4
votes
4
replies
1.0k
views
Fetch protein information of genes in a gene list
protein gene
updated 16 months ago by 45k • written 16 months ago by ▴ 140
0
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1
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1.0k
views
Comment: Comment: Fetch protein information of genes in a gene list
16 months ago by CTLong ▴ 140
0
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0
replies
478
views
Rescaling normalized enrichment score (NES)
heatmap
17 months ago by CTLong ▴ 140
0
votes
0
replies
751
views
Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
19 months ago by CTLong ▴ 140
0
votes
0
replies
393
views
WGCNA modulePreservation on three expression sets
WGCNA
19 months ago by CTLong ▴ 140
1
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0
replies
586
views
Comment: Comment: Tool for gene function identification
19 months ago by CTLong ▴ 140
0
votes
0
replies
829
views
Comment: Comment: Gene set to perform GSVA
19 months ago by CTLong ▴ 140
0
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2
replies
829
views
Gene set to perform GSVA
GSVA
19 months ago by CTLong ▴ 140
1
vote
1
reply
751
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
19 months ago by CTLong ▴ 140
0
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0
replies
33k
views
Comment: Comment: Gene Set Enrichment Analysis after DESeq2
20 months ago by CTLong ▴ 140
0
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0
replies
423
views
Interpret ImpulseDE2 output?
RNA-seq
20 months ago by CTLong ▴ 140
0
votes
1
reply
2.8k
views
Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
20 months ago by CTLong ▴ 140
2
votes
1
reply
1.1k
views
Answer: Answer: Differential gene expression design using Deseq2
updated 21 months ago by 45k • written 21 months ago by ▴ 140
1
vote
1
reply
753
views
Gene expression of microarray data
Microarray
updated 21 months ago by ★ 8.5k • written 21 months ago by ▴ 140
0
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0
replies
1.2k
views
Answer: Answer: filtering lowly expressed reads
22 months ago by CTLong ▴ 140
0
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0
replies
1.1k
views
Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
22 months ago by CTLong ▴ 140
1
vote
3
replies
1.1k
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
22 months ago by CTLong ▴ 140
0
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0
replies
655
views
Answer: Answer: insilico prediction of disulfide bonds in protein
22 months ago by CTLong ▴ 140
1
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1
reply
1.5k
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
22 months ago by CTLong ▴ 140
0
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1
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1.5k
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
22 months ago by CTLong ▴ 140
2
votes
5
replies
1.5k
views
RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 22 months ago by ★ 1.6k • written 22 months ago by ▴ 140
0
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1
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1.4k
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
22 months ago by CTLong ▴ 140
1
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3
replies
1.4k
views
Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 22 months ago by 90k • written 22 months ago by ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: Obtain fitted data from DESeq2
22 months ago by CTLong ▴ 140
0
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1
reply
1.4k
views
Comment: Comment: Obtain fitted data from DESeq2
22 months ago by CTLong ▴ 140
2
votes
4
replies
1.4k
views
Obtain fitted data from DESeq2
DESeq2
22 months ago by CTLong ▴ 140
0
votes
0
replies
1.3k
views
Comment: Comment: STAR SjdbOverHang specification
22 months ago by CTLong ▴ 140
0
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1
reply
1.3k
views
Comment: Comment: STAR SjdbOverHang specification
22 months ago by CTLong ▴ 140
0
votes
3
replies
1.3k
views
STAR SjdbOverHang specification
STAR
22 months ago by CTLong ▴ 140
2
votes
0
replies
1.1k
views
Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
23 months ago by CTLong ▴ 140
1
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1
reply
18k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
23 months ago by CTLong ▴ 140
0
votes
1
reply
1.3k
views
Answer: Answer: Tutorials for Spatial Transcriptomics
23 months ago by CTLong ▴ 140
2
votes
1
reply
1.2k
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 23 months ago by 45k • written 23 months ago by ▴ 140
0
votes
0
replies
1.4k
views
Comment: Comment: Best method for batch correction of three datasets
23 months ago by CTLong ▴ 140
2
votes
2
replies
1.4k
views
Best method for batch correction of three datasets
RNA-seq
updated 23 months ago by 90k • written 23 months ago by ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
23 months ago by CTLong ▴ 140
3
votes
4
replies
1.5k
views
Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 23 months ago by ▴ 10 • written 23 months ago by ▴ 140
0
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1
reply
2.0k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
23 months ago by CTLong ▴ 140
0
votes
0
replies
1.8k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
23 months ago by CTLong ▴ 140
0
votes
0
replies
1.8k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
23 months ago by CTLong ▴ 140
4
votes
4
replies
1.8k
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch-effect
updated 16 months ago by 45k • written 23 months ago by ▴ 140
0
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1
reply
1.5k
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
23 months ago by CTLong ▴ 140
1
vote
0
replies
1.2k
views
Comment: Comment: Harmony integration PC variance explained
23 months ago by CTLong ▴ 140
0
votes
0
replies
1.4k
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
23 months ago by CTLong ▴ 140
59 results • Page 1 of 2
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