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678
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methRead takes too long
MethylKit
updated 5 months ago by ▴ 10 • written 13 months ago by ▴ 140
1
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6
replies
2.6k
views
Does the order of the batch variable matter in Limma design matrix?
Batch
updated 12 months ago by ★ 8.3k • written 19 months ago by ▴ 140
0
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0
replies
414
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Should I plot with methylDiff or methylBase object?
MethylKit
13 months ago by CTLong ▴ 140
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0
replies
2.2k
views
Comment: Comment: Speed up Seurat FindClusters execution?
15 months ago by CTLong ▴ 140
0
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3
replies
2.2k
views
Speed up Seurat FindClusters execution?
Seurat
15 months ago by CTLong ▴ 140
1
vote
0
replies
932
views
Comment: Comment: Fetch protein information of genes in a gene list
15 months ago by CTLong ▴ 140
4
votes
4
replies
932
views
Fetch protein information of genes in a gene list
protein gene
updated 15 months ago by 45k • written 15 months ago by ▴ 140
0
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1
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932
views
Comment: Comment: Fetch protein information of genes in a gene list
15 months ago by CTLong ▴ 140
0
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0
replies
434
views
Rescaling normalized enrichment score (NES)
heatmap
16 months ago by CTLong ▴ 140
0
votes
0
replies
679
views
Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
17 months ago by CTLong ▴ 140
0
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0
replies
355
views
WGCNA modulePreservation on three expression sets
WGCNA
17 months ago by CTLong ▴ 140
1
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0
replies
548
views
Comment: Comment: Tool for gene function identification
17 months ago by CTLong ▴ 140
0
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0
replies
732
views
Comment: Comment: Gene set to perform GSVA
18 months ago by CTLong ▴ 140
0
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2
replies
732
views
Gene set to perform GSVA
GSVA
18 months ago by CTLong ▴ 140
1
vote
1
reply
679
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
17 months ago by CTLong ▴ 140
0
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0
replies
33k
views
Comment: Comment: Gene Set Enrichment Analysis after DESeq2
18 months ago by CTLong ▴ 140
0
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0
replies
381
views
Interpret ImpulseDE2 output?
RNA-seq
18 months ago by CTLong ▴ 140
0
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1
reply
2.6k
views
Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
19 months ago by CTLong ▴ 140
2
votes
1
reply
1.1k
views
Answer: Answer: Differential gene expression design using Deseq2
updated 19 months ago by 45k • written 19 months ago by ▴ 140
1
vote
1
reply
681
views
Gene expression of microarray data
Microarray
updated 20 months ago by ★ 8.3k • written 20 months ago by ▴ 140
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0
replies
1.1k
views
Answer: Answer: filtering lowly expressed reads
20 months ago by CTLong ▴ 140
0
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0
replies
1.0k
views
Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
20 months ago by CTLong ▴ 140
1
vote
3
replies
1.0k
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
20 months ago by CTLong ▴ 140
0
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0
replies
596
views
Answer: Answer: insilico prediction of disulfide bonds in protein
20 months ago by CTLong ▴ 140
1
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1
reply
1.3k
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
20 months ago by CTLong ▴ 140
0
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1
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1.3k
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
20 months ago by CTLong ▴ 140
2
votes
5
replies
1.3k
views
RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 20 months ago by ★ 1.6k • written 20 months ago by ▴ 140
0
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1
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1.3k
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
20 months ago by CTLong ▴ 140
1
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3
replies
1.3k
views
Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 20 months ago by 89k • written 20 months ago by ▴ 140
0
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0
replies
1.3k
views
Comment: Comment: Obtain fitted data from DESeq2
20 months ago by CTLong ▴ 140
0
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1
reply
1.3k
views
Comment: Comment: Obtain fitted data from DESeq2
20 months ago by CTLong ▴ 140
2
votes
4
replies
1.3k
views
Obtain fitted data from DESeq2
DESeq2
20 months ago by CTLong ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: STAR SjdbOverHang specification
21 months ago by CTLong ▴ 140
0
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1
reply
1.1k
views
Comment: Comment: STAR SjdbOverHang specification
21 months ago by CTLong ▴ 140
0
votes
3
replies
1.1k
views
STAR SjdbOverHang specification
STAR
21 months ago by CTLong ▴ 140
2
votes
0
replies
1.0k
views
Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
21 months ago by CTLong ▴ 140
1
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1
reply
18k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
21 months ago by CTLong ▴ 140
0
votes
1
reply
1.2k
views
Answer: Answer: Tutorials for Spatial Transcriptomics
21 months ago by CTLong ▴ 140
2
votes
1
reply
1.1k
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 21 months ago by 45k • written 21 months ago by ▴ 140
0
votes
0
replies
1.3k
views
Comment: Comment: Best method for batch correction of three datasets
21 months ago by CTLong ▴ 140
2
votes
2
replies
1.3k
views
Best method for batch correction of three datasets
RNA-seq
updated 21 months ago by 89k • written 21 months ago by ▴ 140
0
votes
0
replies
1.9k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
21 months ago by CTLong ▴ 140
3
votes
4
replies
1.4k
views
Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 22 months ago by ▴ 10 • written 22 months ago by ▴ 140
0
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1
reply
1.9k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
22 months ago by CTLong ▴ 140
0
votes
0
replies
1.7k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
22 months ago by CTLong ▴ 140
0
votes
0
replies
1.7k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
22 months ago by CTLong ▴ 140
4
votes
4
replies
1.7k
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch-effect
updated 14 months ago by 45k • written 22 months ago by ▴ 140
0
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1
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1.4k
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
22 months ago by CTLong ▴ 140
1
vote
0
replies
1.1k
views
Comment: Comment: Harmony integration PC variance explained
22 months ago by CTLong ▴ 140
0
votes
0
replies
1.3k
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
22 months ago by CTLong ▴ 140
59 results • Page 1 of 2
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