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0
votes
1
reply
510
views
Error when computing bedtools bamtobed -bedpe
human
bedtools
libraries
illumina
bamtobed
updated 3 months ago by
ATpoint
89k • written 3 months ago by
María José
▴ 10
0
votes
1
reply
14k
views
Comment:
Comment: MACS2 --SPMR and --nolambda usage for version 2.1.2
3 months ago by
María José
▴ 10
0
votes
0
replies
828
views
Comment:
Comment: MACS3 Parameter adjustments
4 months ago by
María José
▴ 10
0
votes
2
replies
828
views
Comment:
Comment: MACS3 Parameter adjustments
4 months ago by
María José
▴ 10
0
votes
5
replies
828
views
MACS3 Parameter adjustments
human
libraries
illumina
callpeak
macs3
4 months ago by
María José
▴ 10
0
votes
0
replies
525
views
Comment:
Comment: identify unmapped regions
4 months ago by
María José
▴ 10
0
votes
2
replies
525
views
identify unmapped regions
human
illumina
libraries
4 months ago by
María José
▴ 10
0
votes
1
reply
440
views
Clarification of options --keep-dup: all vs. -f FRAG in MACS3
human
libraries
illumina
callpeak
macs3
updated 4 months ago by
ATpoint
89k • written 4 months ago by
María José
▴ 10
0
votes
1
reply
1.1k
views
Comment:
Comment: Help configuring RepeatMasker
4 months ago by
María José
▴ 10
0
votes
4
replies
1.1k
views
Help configuring RepeatMasker
human
illumina
libraries
RepeatMasker
updated 4 months ago by
Michael
56k • written 4 months ago by
María José
▴ 10
0
votes
1
reply
646
views
Discrepancies calculatin average coverage with Bedtools and Mosdepth
mosdepth
human
bedtools
libraries
illumina
updated 5 months ago by
Pierre Lindenbaum
166k • written 5 months ago by
María José
▴ 10
2
votes
2
replies
716
views
Error with bigWigAverageOverBed
usc
human
libraries
illumina
bigWigAverageOverBed
updated 5 months ago by
Pierre Lindenbaum
166k • written 5 months ago by
María José
▴ 10
0
votes
1
reply
813
views
Comment:
Comment: error in the output of bedops
5 months ago by
María José
▴ 10
0
votes
3
replies
813
views
error in the output of bedops
human
bedtools
libraries
illumina
bedops
updated 5 months ago by
GenoMax
154k • written 5 months ago by
María José
▴ 10
0
votes
1
reply
677
views
Unicycler error
human
illumina
libraries
unicycler
updated 8 months ago by
Arup Ghosh
3.4k • written 8 months ago by
María José
▴ 10
0
votes
1
reply
581
views
Picard AddOrReplaceReadGroups,
human
illumina
libraries
picard
updated 8 months ago by
Pierre Lindenbaum
166k • written 8 months ago by
María José
▴ 10
0
votes
2
replies
889
views
Comment:
Comment: Filter duplicates with picard
8 months ago by
María José
▴ 10
2
votes
5
replies
889
views
Filter duplicates with picard
human
illumina
libraries
picard
updated 8 months ago by
Pierre Lindenbaum
166k • written 8 months ago by
María José
▴ 10
0
votes
0
replies
413
views
Strategies for ecDNA sequenced with Illumina.
human
illumina
libraries
8 months ago by
María José
▴ 10
12
votes
6
replies
1.4k
views
6 follow
Analyze read lengths in Illumina data
human
illumina
libraries
updated 9 months ago by
Pierre Lindenbaum
166k • written 9 months ago by
María José
▴ 10
1
vote
1
reply
667
views
Process Illumina Sequencing Data.
human
illumina
libraries
updated 9 months ago by
GenoMax
154k • written 9 months ago by
María José
▴ 10
0
votes
1
reply
988
views
Retrieve query start and end positions on reverse strand with Pysam
python
alignment
Pysam
updated 10 months ago by
Mark
★ 1.7k • written 10 months ago by
María José
▴ 10
0
votes
1
reply
3.1k
views
Comment:
Comment: Determine type of Pacbio read
10 months ago by
María José
▴ 10
0
votes
1
reply
3.1k
views
Comment:
Comment: Determine type of Pacbio read
10 months ago by
María José
▴ 10
0
votes
2
replies
3.1k
views
Comment:
Comment: Determine type of Pacbio read
10 months ago by
María José
▴ 10
5
votes
11
replies
3.1k
views
Determine type of Pacbio read
sratoolkit
CLR
Pacbio
Hifi
long-reads
updated 10 months ago by
GenoMax
154k • written 10 months ago by
María José
▴ 10
0
votes
0
replies
3.1k
views
Comment:
Comment: Determine type of Pacbio read
10 months ago by
María José
▴ 10
0
votes
0
replies
968
views
Comment:
Comment: Extract aligned positions from reads
10 months ago by
María José
▴ 10
0
votes
0
replies
968
views
Comment:
Comment: Extract aligned positions from reads
10 months ago by
María José
▴ 10
1
vote
4
replies
968
views
Extract aligned positions from reads
samtools
target-sequence
sequencing
genomic-coordinates
10 months ago by
María José
▴ 10
0
votes
1
reply
652
views
Differentiate CLR and Hifi readings in datasets
Pacbio
long-reads
Nanopore
minimap2
updated 10 months ago by
GenoMax
154k • written 10 months ago by
María José
▴ 10
0
votes
1
reply
678
views
reconstruct ecDNA.
plot
human
ecDNA
Pacbio
pbmm2
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
María José
▴ 10
1
vote
2
replies
1.4k
views
how to see Pacbio reads in IGV
pbmm2
pbindex
Pacbio
long-reads
revio
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
María José
▴ 10
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