Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
4.4k
views
Comment: C: Calculating Tajima's D from SNP frequency data
4.6 years ago by Jautis ▴ 580
0
votes
0
replies
4.4k
views
Comment: C: A strange R limma voom function mean-variance trend
4.7 years ago by Jautis ▴ 580
0
votes
0
replies
9.2k
views
Answer: A: 012 genotype matrix using vcf tools
4.8 years ago by Jautis ▴ 580
7
votes
15
replies
8.6k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 2.7 years ago by 45k • written 10.3 years ago by ▴ 580
0
votes
0
replies
775
views
GO based on NCBI annotation
genome enrichment GSEA GO
5.0 years ago by Jautis ▴ 580
0
votes
0
replies
1.5k
views
Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
5.2 years ago by Jautis ▴ 580
0
votes
1
reply
15k
views
Comment: C: How to remove a list of reads from fastq file?
5.2 years ago by Jautis ▴ 580
0
votes
0
replies
1.4k
views
Convert VCF + LDhelmet Recombination Rates to EIGENSTRAT format
vcf linkage SNP genome
5.5 years ago by Jautis ▴ 580
0
votes
0
replies
1.3k
views
find position of snps in cM, given recombination map from ldhelmet
recombination genome physical position
5.5 years ago by Jautis ▴ 580
0
votes
0
replies
3.7k
views
Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
5.5 years ago by Jautis ▴ 580
2
votes
2
replies
3.7k
views
sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf sed processing
updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 580
0
votes
1
reply
17k
views
Comment: C: How to combine chromosome vcf files
5.6 years ago by Jautis ▴ 580
0
votes
0
replies
3.1k
views
Comment: C: Phylogenetic distance betwee species
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 580
2
votes
0
replies
5.1k
views
Comment: C: Good Bioinformatics research papers
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 580
0
votes
1
reply
4.2k
views
Comment: C: Taking genotypes out of a vcf file
updated 5.9 years ago by 45k • written 10.1 years ago by ▴ 580
0
votes
0
replies
15k
views
Comment: C: Calculating the bisulfite conversion rate
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 580
4
votes
2
replies
15k
views
Answer: A: Calculating the bisulfite conversion rate
updated 5.9 years ago by 45k • written 10.2 years ago by ▴ 580
0
votes
0
replies
2.4k
views
Comment: C: vcftools minDP filter not working for samtools genotype calling output
5.9 years ago by Jautis ▴ 580
1
vote
2
replies
2.4k
views
vcftools minDP filter not working for samtools genotype calling output
genotype filtering SNP SNP-calling
5.9 years ago by Jautis ▴ 580
0
votes
1
reply
1.4k
views
Efficiently run blat for long sequences
blat alignment sequence assembly
updated 6.0 years ago by ★ 2.6k • written 6.0 years ago by ▴ 580
1
vote
1
reply
1.8k
views
Annotate CpG Islands for a new genome
CpG assembly annotation
updated 6.4 years ago by ★ 3.9k • written 6.4 years ago by ▴ 580
1
vote
8
replies
3.2k
views
Error in transferring annotations to a new assembly using RATT
alignment annotation software error Assembly
updated 6.6 years ago by 35k • written 6.7 years ago by ▴ 580
0
votes
2
replies
3.2k
views
Comment: C: Error in transferring annotations to a new assembly using RATT
6.7 years ago by Jautis ▴ 580
0
votes
2
replies
3.2k
views
Comment: C: Error in transferring annotations to a new assembly using RATT
6.7 years ago by Jautis ▴ 580
2
votes
1
reply
3.1k
views
Create a pseudo-haploid fasta file based genotype calls for an individual (vcf file)
vcf sequence assembly SNP
updated 6.8 years ago by ★ 1.7k • written 6.8 years ago by ▴ 580
0
votes
0
replies
1.2k
views
Find SNPs which disrupt CpG sites
vcf genome variants
6.9 years ago by Jautis ▴ 580
0
votes
0
replies
1.7k
views
Determine the derived allele
alignment
7.1 years ago by Jautis ▴ 580
0
votes
0
replies
3.1k
views
Comment: C: GOseq with non-supported organism
7.1 years ago by Jautis ▴ 580
1
vote
2
replies
3.1k
views
GOseq with non-supported organism
GO GOseq R
7.1 years ago by Jautis ▴ 580
0
votes
1
reply
2.0k
views
Comment: C: Find chromosomal location of a scaffold
7.1 years ago by Jautis ▴ 580
0
votes
1
reply
2.0k
views
Comment: C: Find chromosomal location of a scaffold
7.1 years ago by Jautis ▴ 580
1
vote
5
replies
2.0k
views
Find chromosomal location of a scaffold
genome mapping
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 580
0
votes
1
reply
4.3k
views
Comment: C: Convert an altered sam file into a bam file
7.7 years ago by Jautis ▴ 580
3
votes
4
replies
4.3k
views
Convert an altered sam file into a bam file
sam bam sequencing
7.7 years ago by Jautis ▴ 580
0
votes
0
replies
2.1k
views
BSMap to Bismark bam file formats
next-gen sequencing bam bisulfite
7.8 years ago by Jautis ▴ 580
0
votes
0
replies
1.5k
views
Comment: C: Genotype calls for a list of variable sites
7.9 years ago by Jautis ▴ 580
0
votes
2
replies
1.5k
views
Genotype calls for a list of variable sites
genotype-calling GATK variant-calling
updated 7.9 years ago by 166k • written 7.9 years ago by ▴ 580
1
vote
0
replies
8.6k
views
Comment: C: Modifying fasta file based on vcf information
8.3 years ago by Jautis ▴ 580
10
votes
4
replies
6.8k
views
Comparing two phylogenies
covariance phylogeny tree
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 580
0
votes
1
reply
2.3k
views
Comment: C: Outputting DP4 flag in GATK
8.4 years ago by Jautis ▴ 580
2
votes
3
replies
2.3k
views
Outputting DP4 flag in GATK
variant calling sequencing gatk
updated 8.4 years ago by 5.8k • written 8.4 years ago by ▴ 580
0
votes
1
reply
2.1k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
8.5 years ago by Jautis ▴ 580
0
votes
0
replies
2.1k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
8.5 years ago by Jautis ▴ 580
0
votes
7
replies
2.1k
views
Getting reads that end at a digest site from a sam/bam file
bisulfite digest
updated 8.5 years ago by 166k • written 8.5 years ago by ▴ 580
0
votes
1
reply
2.1k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
8.5 years ago by Jautis ▴ 580
0
votes
1
reply
2.1k
views
Calling allele-specific methylation from bisulfite sequencing reads
bisulfite-sequencing allele-specific sequencing
updated 8.6 years ago by 15k • written 8.6 years ago by ▴ 580
1
vote
1
reply
6.8k
views
Comment: C: Downsampling bam file to 2x coverage
8.7 years ago by Jautis ▴ 580
0
votes
1
reply
4.4k
views
Comment: C: Numbers of Samples per Lane in RNAseq
8.7 years ago by Jautis ▴ 580
0
votes
2
replies
6.8k
views
Comment: C: Downsampling bam file to 2x coverage
8.7 years ago by Jautis ▴ 580
0
votes
1
reply
4.4k
views
Comment: C: Numbers of Samples per Lane in RNAseq
8.7 years ago by Jautis ▴ 580
152 results • Page 2 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6