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0
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replies
236
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How do I pick the best conditions for scATAC-Seq after a series of bulk test runs?
ATAC-seq
5 months ago by cyril-cros ▴ 950
1
vote
3
replies
456
views
Should unique gene names/transcript IDs be used for ribosomal gene copies in a GTF/GFF file?
GTF GFF
updated 5 months ago by ★ 1.9k • written 5 months ago by ▴ 950
12
votes
6
replies
11k
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How to subset a bed or gtf file to some genes of interest?
bed gtf gene genome
updated 5.2 years ago by ▴ 210 • written 9.1 years ago by ▴ 950
0
votes
1
reply
2.8k
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How to identify the ancestral population to which an individual belongs knowing its allele frequencies?
SNP infer ancestry STRUCTURE
updated 8.2 years ago by ▴ 700 • written 8.2 years ago by ▴ 950
2
votes
2
replies
2.5k
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Where can I find the Interpro/OrthoMCL annotation of all the proteins of a species?
interpro orthomcl genome annotation
updated 20 months ago by 43k • written 8.5 years ago by ▴ 950
5
votes
8
replies
2.3k
views
How to find all the GO terms related to morphology/developpment?
gene ontology morphology evolution
updated 8.6 years ago by 8.6k • written 8.6 years ago by ▴ 950
2
votes
10
replies
18k
views
How do you use the Aspera ascp command?
aspera gigascience gigaDb
updated 2.7 years ago by 43k • written 8.6 years ago by ▴ 950
0
votes
1
reply
1.9k
views
How to started on SNP analysis
evolution SNP recombination genomics
updated 19 months ago by 43k • written 8.6 years ago by ▴ 950
3
votes
1
reply
2.9k
views
What are the chromosome fragments you see in a genome, and where is the mitochondrial genome?
sequencing genome
updated 19 months ago by 43k • written 8.7 years ago by ▴ 950
2
votes
2
replies
2.1k
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Fast tool for de novo motif search
motif de-novo MEME
updated 19 months ago by 43k • written 8.9 years ago by ▴ 950
3
votes
3
replies
1.9k
views
Phylogeny using UTR sequences: any insights?
RNA-Seq annotation phylogeny
updated 8.9 years ago by ★ 1.2k • written 9.0 years ago by ▴ 950
4
votes
5
replies
1.8k
views
Assign number to bed file intervals
bed
updated 16 months ago by 43k • written 8.9 years ago by ▴ 950
0
votes
1
reply
1.9k
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R Genomic Features: managing de novo annotations and mapping to the reference
RNA-Seq GenomicFeatures
updated 16 months ago by 43k • written 8.9 years ago by ▴ 950
4
votes
4
replies
2.9k
views
Any advice on how to do isoform quantification?
RNA-Seq isoform transcriptome
updated 16 months ago by 43k • written 8.9 years ago by ▴ 950
16
votes
11
replies
11k
views
7 follow
Bedtools: merge all features with the same id
annotation bedtools bed
updated 16 months ago by ▴ 60 • written 8.9 years ago by ▴ 950
0
votes
3
replies
1.9k
views
Remove paired end reads joining two distinct genes
RNA-Seq paired-end
updated 16 months ago by 43k • written 8.9 years ago by ▴ 950
1
vote
3
replies
2.3k
views
Bedtools merge using strand specificity?
bedtools
updated 16 months ago by 43k • written 8.9 years ago by ▴ 950
0
votes
0
replies
1.7k
views
How to align/cluster/do phylogeny work on (un)spliced transcripts?
phylogeny alignment UTR RNA-Seq
9.0 years ago by cyril-cros ▴ 950
2
votes
5
replies
3.6k
views
Do you have abnormally long introns in your RNA Seq alignment? How do you get rid of them?
alignment RNA-Seq STAR
updated 15 months ago by 43k • written 9.0 years ago by ▴ 950
1
vote
4
replies
3.1k
views
Finding the minimum distance between any two genes in a list / Coping with pseudo-genes in RNA-Seq data?
rna-seq genome pseudo-genes
updated 15 months ago by 43k • written 9.1 years ago by ▴ 950
3
votes
3
replies
2.5k
views
Mapping a de novo built transcriptome to a reference transcriptome
transcript-assembly de-novo-transcriptome RNA-Seq
updated 23 months ago by 43k • written 9.1 years ago by ▴ 950
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