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Beagle 5 error: No VCF records found in the specified interval
Imputation VCF Beagle PLINK
4.1 years ago by aritra90 ▴ 70
1
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2.6k
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Answer: Answer: Beagle 5 error: No VCF records found in the specified interval
4.1 years ago by aritra90 ▴ 70
0
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0
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2.6k
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Comment: Comment: Beagle 5 error: No VCF records found in the specified interval
4.1 years ago by aritra90 ▴ 70
0
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0
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1.2k
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Discussion on abundance of trans-eQTLs and almost no cis-eQTLs
RNA-Seq SNP gene eqtl gene expression
5.8 years ago by aritra90 ▴ 70
0
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0
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9.6k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
updated 5.9 years ago by 45k • written 9.8 years ago by ▴ 70
0
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1
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9.6k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 70
0
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1
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9.6k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 70
0
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0
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9.6k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 70
0
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0
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9.6k
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Comment: C: Beagle 4.1 error : Possible data conversion issue
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 70
0
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0
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7.3k
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Comment: C: EIGENSOFT: CONVERTF ignoring samples
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 70
0
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0
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1.3k
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Genome Inflation factor for genomic control too large
genomics gwas SNP plink stratification
6.5 years ago by aritra90 ▴ 70
7
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6
replies
5.9k
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EIGENSOFT : Ploteig, 3D Plots
EIGENSOFT SNP PCA PLOT
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 70
3
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1
reply
2.8k
views
How to force missing values for genotype?
plink genotypes SNP
updated 6.6 years ago by 12k • written 6.6 years ago by ▴ 70
0
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1
reply
3.3k
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Comment: C: Prune SNPs in LD with a list of SNPs
7.1 years ago by aritra90 ▴ 70
1
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3
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3.3k
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Prune SNPs in LD with a list of SNPs
SNP plink LD
7.1 years ago by aritra90 ▴ 70
0
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0
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11k
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Comment: C: VCF filtering based on AB (Allele-Balance) tag
7.1 years ago by aritra90 ▴ 70
0
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1
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11k
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Comment: C: VCF filtering based on AB (Allele-Balance) tag
7.1 years ago by aritra90 ▴ 70
8
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15
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9.6k
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6 follow
Beagle 4.1 error : Possible data conversion issue
VCF PLINK SNP BEAGLE
updated 3.3 years ago by 45k • written 10.0 years ago by ▴ 70
0
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0
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2.2k
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Merging a PLINK file with itself after duplicating sampleIDs and rsIDs
SNP PLINK genotype merging
8.5 years ago by aritra90 ▴ 70
0
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3
replies
2.2k
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Maximum amount of data that smartPCA program can process?
genotype eigensoft smartpca pca SNP
8.5 years ago by aritra90 ▴ 70
0
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0
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2.2k
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Comment: C: Maximum amount of data that smartPCA program can process?
8.5 years ago by aritra90 ▴ 70
0
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0
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1.6k
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Merging data with b37 and hg19
SNP PLINK genome
9.0 years ago by aritra90 ▴ 70
0
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1
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3.2k
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Comment: C: PLINK --within flag not clustering all of the samples
9.1 years ago by aritra90 ▴ 70
0
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1
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3.2k
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Comment: C: PLINK --within flag not clustering all of the samples
9.1 years ago by aritra90 ▴ 70
0
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5
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3.2k
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PLINK --within flag not clustering all of the samples
PLINK genotype clustering treemix
9.1 years ago by aritra90 ▴ 70
1
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5
replies
11k
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PLINK: removing SNPs missing in all samples
PLINK SNP
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 70
9
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4
replies
7.3k
views
EIGENSOFT: CONVERTF ignoring samples
EIGENSOFT PLINK convertf
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 70
0
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1
reply
11k
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Comment: C: PLINK: removing SNPs missing in all samples
10.1 years ago by aritra90 ▴ 70
0
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0
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9.0k
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Comment: C: PLINK Merge error: File write failure
10.1 years ago by aritra90 ▴ 70
4
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2
replies
9.0k
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PLINK Merge error: File write failure
plink 1000genomes
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 70
0
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0
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25k
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Comment: Comment: Quick Way To Combine Two Datasets Using Only Common Markers
updated 3.2 years ago by 45k • written 10.2 years ago by ▴ 70
0
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0
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4.6k
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Comment: Comment: Allelic Distance calculation using PED format data
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 70
0
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0
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4.6k
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Comment: Comment: Allelic Distance calculation using PED format data
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 70
0
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2
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4.6k
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Comment: Comment: Allelic Distance calculation using PED format data
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 70
3
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6
replies
4.6k
views
Allelic Distance calculation using PED format data
python Allele plink SNP genome
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 70
0
votes
0
replies
3.1k
views
Understanding AWClust's SNP file data format and converting a PED file to it
plink allele SNP ped
updated 3.0 years ago by 45k • written 10.3 years ago by ▴ 70
0
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0
replies
2.8k
views
Answer: Answer: Looking for Jewish Exoms
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 70
0
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1
reply
2.4k
views
Converting Behar et al. dataset from GEO to PLink format
next-gen illumina SNP Population-Genetics PLINK
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 70
0
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0
replies
5.9k
views
Comment: Comment: EIGENSOFT : Ploteig, 3D Plots
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 70
0
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1
reply
5.9k
views
Comment: Comment: EIGENSOFT : Ploteig, 3D Plots
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 70
0
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0
replies
8.3k
views
Comment: Comment: Compare consecutive columns of a file and return the number of non-matching elem
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 70
0
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0
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8.3k
views
Comment: Comment: Compare consecutive columns of a file and return the number of non-matching elem
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 70
3
votes
5
replies
8.3k
views
Compare consecutive columns of a file and return the number of non-matching elements
Haplotype Beagle Python
updated 2.9 years ago by 45k • written 10.5 years ago by ▴ 70
0
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0
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3.1k
views
Answer: Answer: Compare consecutive columns of a phased Beagle file to generate the number of el
updated 2.9 years ago by 45k • written 10.5 years ago by ▴ 70
0
votes
3
replies
3.1k
views
Compare consecutive columns of a phased Beagle file to generate the number of elements that matches.
beagle bash awk shell
updated 2.9 years ago by 45k • written 10.5 years ago by ▴ 70
0
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0
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3.1k
views
Comment: Comment: Compare consecutive columns of a phased Beagle file to generate the number of el
updated 2.9 years ago by 45k • written 10.5 years ago by ▴ 70
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