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Comment: Comment: Normalization on top of TMM scaled data
10 months ago by weixiaokuan ▴ 140
1
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2
replies
602
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Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
10 months ago by weixiaokuan ▴ 140
9
votes
7
replies
2.0k
views
6 follow
Can BWA (mem) detect longer deletions?
alignment bwa
updated 10 months ago by 20k • written 12 months ago by ▴ 140
1
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0
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2.0k
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Comment: Comment: Can BWA (mem) detect longer deletions?
12 months ago by weixiaokuan ▴ 140
0
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2
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2.0k
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Comment: Comment: Can BWA (mem) detect longer deletions?
12 months ago by weixiaokuan ▴ 140
0
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1
reply
814
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Comment: Comment: How to read Varscan VCF output in column "Cons"?
13 months ago by weixiaokuan ▴ 140
0
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3
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814
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How to read Varscan VCF output in column "Cons"?
VCF Varscan
updated 13 months ago by ★ 2.3k • written 13 months ago by ▴ 140
0
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2
replies
771
views
How to map genomic sequence to protein functions or domains?
GRange Genome Ensembldb annotation
updated 16 months ago by 6.7k • written 16 months ago by ▴ 140
0
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1
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1.4k
views
Comment: Comment: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
19 months ago by weixiaokuan ▴ 140
3
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3
replies
1.4k
views
How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
mac bowtie2 bwa m2
updated 19 months ago by 145k • written 19 months ago by ▴ 140
0
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0
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899
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Comment: Comment: Any R package for pathway upstream regulator analysis?
21 months ago by weixiaokuan ▴ 140
0
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2
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899
views
Any R package for pathway upstream regulator analysis?
network-analysis Pathway-Analysis IPA
updated 21 months ago by 44k • written 21 months ago by ▴ 140
1
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1
reply
1.1k
views
Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
sleuth kallisto
updated 21 months ago by ★ 6.8k • written 21 months ago by ▴ 140
0
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1
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833
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Comment: Comment: How to use Sleuth for Kallisto results in one directory?
21 months ago by weixiaokuan ▴ 140
2
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2
replies
833
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How to use Sleuth for Kallisto results in one directory?
sleuth kallisto
updated 21 months ago by ★ 6.8k • written 21 months ago by ▴ 140
12
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28
replies
9.7k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 5.2 years ago by 8.2k • written 8.2 years ago by ▴ 140
0
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0
replies
777
views
significance evaluation of Motif identified by SeqLogo
alignment sequence motif
5.7 years ago by weixiaokuan ▴ 140
0
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3
replies
2.8k
views
bioawk output in original fastq format
bioawk fastq
updated 5.8 years ago by ▴ 460 • written 7.1 years ago by ▴ 140
0
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1
reply
3.5k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.0 years ago by weixiaokuan ▴ 140
0
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1
reply
3.5k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.0 years ago by weixiaokuan ▴ 140
0
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2
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3.5k
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Comment: C: RNA-Seq without replicate using Kallisto
8.0 years ago by weixiaokuan ▴ 140
0
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1
reply
3.5k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.0 years ago by weixiaokuan ▴ 140
0
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0
replies
3.5k
views
Comment: C: RNA-Seq without replicate using Kallisto
8.0 years ago by weixiaokuan ▴ 140
1
vote
11
replies
3.5k
views
RNA-Seq without replicate using Kallisto
RNA-Seq Kallisto
8.0 years ago by weixiaokuan ▴ 140
1
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0
replies
5.8k
views
Comment: C: WGCNA maxBlockSize limit
8.2 years ago by weixiaokuan ▴ 140
0
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0
replies
5.8k
views
Comment: C: WGCNA maxBlockSize limit
8.2 years ago by weixiaokuan ▴ 140
0
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0
replies
5.8k
views
Comment: C: WGCNA maxBlockSize limit
8.2 years ago by weixiaokuan ▴ 140
0
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1
reply
5.8k
views
Comment: C: WGCNA maxBlockSize limit
8.2 years ago by weixiaokuan ▴ 140
0
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1
reply
5.8k
views
Comment: C: WGCNA maxBlockSize limit
8.2 years ago by weixiaokuan ▴ 140
1
vote
10
replies
5.8k
views
WGCNA maxBlockSize limit
WGCNA
8.2 years ago by weixiaokuan ▴ 140
1
vote
1
reply
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
1
vote
1
reply
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
1
vote
1
reply
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
0
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2
replies
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
0
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0
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2.2k
views
Comment: C: identify associated genes with methylation bumps
8.2 years ago by weixiaokuan ▴ 140
2
votes
2
replies
2.2k
views
identify associated genes with methylation bumps
methylation illumina epic minfi ChAMP RnBeads
updated 8.2 years ago by 13k • written 8.2 years ago by ▴ 140
0
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1
reply
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
0
votes
1
reply
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
0
votes
2
replies
9.7k
views
Comment: C: illumina EPIC array support by R packages?
8.2 years ago by weixiaokuan ▴ 140
0
votes
1
reply
3.1k
views
Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
2
votes
4
replies
3.1k
views
Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
RNA-Seq DESeq2
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
9
votes
5
replies
5.2k
views
DESeq2: different log2FC results when using subset of data
RNA-Seq DESeq2
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
0
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0
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5.2k
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Comment: Comment: DESeq2: different log2FC results when using subset of data
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
0
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1
reply
15k
views
Comment: Comment: which normalized counts is better from DESeq2
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
21
votes
6
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15k
views
which normalized counts is better from DESeq2
RNA-Seq DESeq2
updated 21 months ago by 44k • written 9.2 years ago by ▴ 140
0
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0
replies
15k
views
Comment: C: which normalized counts is better from DESeq2
9.2 years ago by weixiaokuan ▴ 140
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