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Comment: Comment: Normalization on top of TMM scaled data
23 months ago by weixiaokuan ▴ 140
1
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2
replies
914
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Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
23 months ago by weixiaokuan ▴ 140
9
votes
7
replies
3.4k
views
6 follow
Can BWA (mem) detect longer deletions?
alignment bwa
updated 24 months ago by 20k • written 2.1 years ago by ▴ 140
1
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0
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3.4k
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Comment: Comment: Can BWA (mem) detect longer deletions?
2.1 years ago by weixiaokuan ▴ 140
0
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2
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3.4k
views
Comment: Comment: Can BWA (mem) detect longer deletions?
2.1 years ago by weixiaokuan ▴ 140
0
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1
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1.3k
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Comment: Comment: How to read Varscan VCF output in column "Cons"?
2.2 years ago by weixiaokuan ▴ 140
0
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3
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1.3k
views
How to read Varscan VCF output in column "Cons"?
VCF Varscan
updated 2.2 years ago by ★ 2.4k • written 2.2 years ago by ▴ 140
0
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2
replies
1.1k
views
How to map genomic sequence to protein functions or domains?
GRange Genome Ensembldb annotation
updated 2.4 years ago by 8.0k • written 2.5 years ago by ▴ 140
0
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1
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1.9k
views
Comment: Comment: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
2.7 years ago by weixiaokuan ▴ 140
3
votes
3
replies
1.9k
views
How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
mac bowtie2 bwa m2
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 140
0
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0
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1.4k
views
Comment: Comment: Any R package for pathway upstream regulator analysis?
2.8 years ago by weixiaokuan ▴ 140
0
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2
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1.4k
views
Any R package for pathway upstream regulator analysis?
network-analysis Pathway-Analysis IPA
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 140
1
vote
1
reply
1.5k
views
Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
sleuth kallisto
updated 2.8 years ago by ★ 7.7k • written 2.8 years ago by ▴ 140
0
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1
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1.2k
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Comment: Comment: How to use Sleuth for Kallisto results in one directory?
2.8 years ago by weixiaokuan ▴ 140
2
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2
replies
1.2k
views
How to use Sleuth for Kallisto results in one directory?
sleuth kallisto
updated 2.8 years ago by ★ 7.7k • written 2.8 years ago by ▴ 140
12
votes
28
replies
12k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 6.3 years ago by 8.3k • written 9.3 years ago by ▴ 140
0
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0
replies
929
views
significance evaluation of Motif identified by SeqLogo
alignment sequence motif
6.8 years ago by weixiaokuan ▴ 140
0
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3
replies
3.2k
views
bioawk output in original fastq format
bioawk fastq
updated 6.9 years ago by ▴ 460 • written 8.1 years ago by ▴ 140
0
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1
reply
4.3k
views
Comment: C: RNA-Seq without replicate using Kallisto
9.0 years ago by weixiaokuan ▴ 140
0
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1
reply
4.3k
views
Comment: C: RNA-Seq without replicate using Kallisto
9.0 years ago by weixiaokuan ▴ 140
0
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2
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4.3k
views
Comment: C: RNA-Seq without replicate using Kallisto
9.0 years ago by weixiaokuan ▴ 140
0
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1
reply
4.3k
views
Comment: C: RNA-Seq without replicate using Kallisto
9.0 years ago by weixiaokuan ▴ 140
0
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0
replies
4.3k
views
Comment: C: RNA-Seq without replicate using Kallisto
9.0 years ago by weixiaokuan ▴ 140
1
vote
11
replies
4.3k
views
RNA-Seq without replicate using Kallisto
RNA-Seq Kallisto
9.0 years ago by weixiaokuan ▴ 140
1
vote
0
replies
6.8k
views
Comment: C: WGCNA maxBlockSize limit
9.2 years ago by weixiaokuan ▴ 140
0
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0
replies
6.8k
views
Comment: C: WGCNA maxBlockSize limit
9.2 years ago by weixiaokuan ▴ 140
0
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0
replies
6.8k
views
Comment: C: WGCNA maxBlockSize limit
9.2 years ago by weixiaokuan ▴ 140
0
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1
reply
6.8k
views
Comment: C: WGCNA maxBlockSize limit
9.2 years ago by weixiaokuan ▴ 140
0
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1
reply
6.8k
views
Comment: C: WGCNA maxBlockSize limit
9.2 years ago by weixiaokuan ▴ 140
1
vote
10
replies
6.8k
views
WGCNA maxBlockSize limit
WGCNA
9.2 years ago by weixiaokuan ▴ 140
1
vote
1
reply
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
1
vote
1
reply
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
1
vote
1
reply
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
0
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2
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12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
0
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0
replies
2.5k
views
Comment: C: identify associated genes with methylation bumps
9.3 years ago by weixiaokuan ▴ 140
2
votes
2
replies
2.5k
views
identify associated genes with methylation bumps
methylation illumina epic minfi ChAMP RnBeads
updated 9.3 years ago by 13k • written 9.3 years ago by ▴ 140
0
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1
reply
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
0
votes
1
reply
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
0
votes
2
replies
12k
views
Comment: C: illumina EPIC array support by R packages?
9.3 years ago by weixiaokuan ▴ 140
0
votes
1
reply
3.6k
views
Comment: Comment: Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 140
2
votes
4
replies
3.6k
views
Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
RNA-Seq DESeq2
updated 2.9 years ago by 45k • written 10.2 years ago by ▴ 140
9
votes
5
replies
5.9k
views
DESeq2: different log2FC results when using subset of data
RNA-Seq DESeq2
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 140
0
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0
replies
5.9k
views
Comment: Comment: DESeq2: different log2FC results when using subset of data
updated 2.8 years ago by 45k • written 10.2 years ago by ▴ 140
0
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1
reply
17k
views
Comment: Comment: which normalized counts is better from DESeq2
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 140
21
votes
6
replies
17k
views
which normalized counts is better from DESeq2
RNA-Seq DESeq2
updated 2.8 years ago by 45k • written 10.3 years ago by ▴ 140
0
votes
0
replies
17k
views
Comment: C: which normalized counts is better from DESeq2
10.3 years ago by weixiaokuan ▴ 140
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