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1
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2
replies
496
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Normalization on top of TMM scaled data
RNA-Seq edgeR Normalization
6 months ago by weixiaokuan ▴ 140
9
votes
7
replies
1.6k
views
6 follow
Can BWA (mem) detect longer deletions?
alignment bwa
updated 6 months ago by 20k • written 8 months ago by ▴ 140
0
votes
3
replies
690
views
How to read Varscan VCF output in column "Cons"?
VCF Varscan
updated 9 months ago by ★ 2.1k • written 9 months ago by ▴ 140
0
votes
2
replies
673
views
How to map genomic sequence to protein functions or domains?
GRange Genome Ensembldb annotation
updated 12 months ago by 6.4k • written 12 months ago by ▴ 140
3
votes
3
replies
1.2k
views
How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
mac bowtie2 bwa m2
updated 15 months ago by 142k • written 15 months ago by ▴ 140
0
votes
2
replies
749
views
Any R package for pathway upstream regulator analysis?
network-analysis Pathway-Analysis IPA
updated 16 months ago by 43k • written 16 months ago by ▴ 140
1
vote
1
reply
977
views
Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
sleuth kallisto
updated 16 months ago by ★ 6.0k • written 16 months ago by ▴ 140
2
votes
2
replies
722
views
How to use Sleuth for Kallisto results in one directory?
sleuth kallisto
updated 16 months ago by ★ 6.0k • written 16 months ago by ▴ 140
12
votes
28
replies
9.2k
views
illumina EPIC array support by R packages?
methylation minfi champ rnbeads
updated 4.9 years ago by 8.2k • written 7.9 years ago by ▴ 140
0
votes
0
replies
734
views
significance evaluation of Motif identified by SeqLogo
alignment sequence motif
5.4 years ago by weixiaokuan ▴ 140
0
votes
3
replies
2.7k
views
bioawk output in original fastq format
bioawk fastq
updated 5.5 years ago by ▴ 460 • written 6.7 years ago by ▴ 140
1
vote
11
replies
3.4k
views
RNA-Seq without replicate using Kallisto
RNA-Seq Kallisto
7.6 years ago by weixiaokuan ▴ 140
1
vote
10
replies
5.5k
views
WGCNA maxBlockSize limit
WGCNA
7.8 years ago by weixiaokuan ▴ 140
2
votes
2
replies
2.1k
views
identify associated genes with methylation bumps
methylation illumina epic minfi ChAMP RnBeads
updated 7.9 years ago by 13k • written 7.9 years ago by ▴ 140
2
votes
4
replies
2.9k
views
Does the BAM need to be sorted by name (sort -n) for DESeq2 pipeline?
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
9
votes
5
replies
5.0k
views
DESeq2: different log2FC results when using subset of data
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
21
votes
6
replies
15k
views
which normalized counts is better from DESeq2
RNA-Seq DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 140
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