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7
votes
6
replies
7.1k
views
7 follow
ATAC-seq +4 -5 shift
atac-seq
updated 6 months ago by 81k • written 4.1 years ago by ▴ 70
15
votes
2
replies
961
views
Pooling animal samples to a lower number of replicates vs. sequencing a subgroup of the animal
experimental-design RNA-seq RRBS
updated 12 months ago by 19k • written 12 months ago by ▴ 70
0
votes
1
reply
3.7k
views
Comment: C: Why ranges of narrowPeak file and that of bed file are not identical
3.2 years ago by Jingyue ▴ 70
0
votes
2
replies
16k
views
Comment: C: DESeq2 compare all levels
3.2 years ago by Jingyue ▴ 70
0
votes
1
reply
16k
views
Comment: C: DESeq2 compare all levels
3.2 years ago by Jingyue ▴ 70
0
votes
0
replies
2.9k
views
Answer: A: Retrieve genomic physical coordinates of 3'UTR for set of genes
3.3 years ago by Jingyue ▴ 70
0
votes
0
replies
1.5k
views
Job: PhD assistantship in animal functional genomics and bioinformatics at Cornell
epigenetics functional-genomics next-gen
updated 10 months ago by 43k • written 3.4 years ago by ▴ 70
0
votes
1
reply
13k
views
Comment: C: ATAC-seq DE analysis
4.1 years ago by Jingyue ▴ 70
0
votes
1
reply
5.5k
views
Comment: C: ATAC-seq 150bp reads
4.2 years ago by Jingyue ▴ 70
0
votes
0
replies
5.0k
views
Comment: C: Running Cuffmerge error "duplicate/invalid 'transcript' "
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 70
0
votes
0
replies
3.4k
views
Comment: C: cutadapt cannot work on my fastq files
updated 4.4 years ago by 43k • written 8.7 years ago by ▴ 70
0
votes
1
reply
8.5k
views
Comment: C: Cuffmerge running error
updated 4.5 years ago by 43k • written 8.7 years ago by ▴ 70
0
votes
0
replies
8.9k
views
Comment: C: Differential Peaks Between Replicates
4.5 years ago by Jingyue ▴ 70
0
votes
1
reply
860
views
ChIP-seq differential binding analysis tools
ChIP-Seq Diffbind Csaw
4.5 years ago by Jingyue ▴ 70
0
votes
0
replies
5.5k
views
Comment: C: What is the best method ChIPseq differential binding analysis?
4.5 years ago by Jingyue ▴ 70
0
votes
2
replies
1.8k
views
Chip-seeker heatmap around the peak centers
ChIPseeker R
updated 4.6 years ago by 11k • written 4.7 years ago by ▴ 70
0
votes
0
replies
1.5k
views
Answer: A: Performing differential binding analyses between ChIP samples using Deeptools (S
4.7 years ago by Jingyue ▴ 70
0
votes
1
reply
2.6k
views
Comment: C: 2 peak files in plotAvgProf2 [ChIPseeker]
4.7 years ago by Jingyue ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: Chip-seeker heatmap around the peak centers
4.7 years ago by Jingyue ▴ 70
0
votes
1
reply
2.4k
views
Comment: C: Using Diffbind R-studio
4.7 years ago by Jingyue ▴ 70
0
votes
0
replies
914
views
Downstream of Csaw differential binding region
ChIP-Seq csaw differential binding peaks
4.7 years ago by Jingyue ▴ 70
1
vote
0
replies
6.6k
views
Comment: C: HOMER annotatePeaks - No Annotations
4.8 years ago by Jingyue ▴ 70
0
votes
0
replies
8.1k
views
Comment: C: Extremely low mapping rates with bowtie2
5.0 years ago by Jingyue ▴ 70
0
votes
1
reply
7.0k
views
Comment: C: Sequence Bias Bismark Output Interpretation
6.6 years ago by Jingyue ▴ 70
0
votes
0
replies
3.4k
views
Comment: C: sc-WBGS library GC content, low bismark mapping rate, high CHH%
6.6 years ago by Jingyue ▴ 70
1
vote
2
replies
3.4k
views
sc-WBGS library GC content, low bismark mapping rate, high CHH%
wgbs gc content methylation
updated 6.7 years ago by ▴ 40 • written 6.7 years ago by ▴ 70
0
votes
0
replies
1.1k
views
extremely small value on cuffnorm fpkm table
RNA-Seq normalized-value cufflinks fpkm
updated 19 months ago by 43k • written 8.5 years ago by ▴ 70
1
vote
3
replies
5.0k
views
Running Cuffmerge error "duplicate/invalid 'transcript' "
RNA-Seq software-error
updated 20 months ago by 43k • written 8.7 years ago by ▴ 70
0
votes
1
reply
2.9k
views
Comment: Comment: Ensembl Gtf Cuffmerge Duplicates
updated 18 months ago by 43k • written 8.7 years ago by ▴ 70
0
votes
0
replies
1.4k
views
multiple mapping using tophat2
RNA-Seq
updated 2.3 years ago by 43k • written 8.7 years ago by ▴ 70
0
votes
0
replies
3.4k
views
Comment: C: cutadapt cannot work on my fastq files
8.7 years ago by Jingyue ▴ 70
2
votes
4
replies
3.4k
views
cutadapt cannot work on my fastq files
sequencing RNA-Seq
updated 2.1 years ago by 43k • written 8.7 years ago by ▴ 70
5
votes
1
reply
2.7k
views
Why Cuffdiff shows "no significant" expression difference in one of sample is 0 and another with a very high value?
Cufflinks RNA-Seq
updated 16 months ago by 43k • written 8.8 years ago by ▴ 70
33 results • Page 1 of 1
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