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7
votes
6
replies
7.1k
views
7 follow
ATAC-seq +4 -5 shift
atac-seq
updated 7 months ago by
ATpoint
82k • written 4.1 years ago by
Jingyue
▴ 70
15
votes
2
replies
995
views
Pooling animal samples to a lower number of replicates vs. sequencing a subgroup of the animal
experimental-design
RNA-seq
RRBS
updated 13 months ago by
i.sudbery
19k • written 13 months ago by
Jingyue
▴ 70
0
votes
1
reply
3.7k
views
Comment:
C: Why ranges of narrowPeak file and that of bed file are not identical
3.2 years ago by
Jingyue
▴ 70
0
votes
2
replies
16k
views
Comment:
C: DESeq2 compare all levels
3.3 years ago by
Jingyue
▴ 70
0
votes
1
reply
16k
views
Comment:
C: DESeq2 compare all levels
3.3 years ago by
Jingyue
▴ 70
0
votes
0
replies
3.0k
views
Answer:
A: Retrieve genomic physical coordinates of 3'UTR for set of genes
3.3 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.5k
views
Job:
PhD assistantship in animal functional genomics and bioinformatics at Cornell
epigenetics
functional-genomics
next-gen
updated 10 months ago by
Ram
43k • written 3.5 years ago by
Jingyue
▴ 70
0
votes
1
reply
13k
views
Comment:
C: ATAC-seq DE analysis
4.1 years ago by
Jingyue
▴ 70
0
votes
1
reply
5.6k
views
Comment:
C: ATAC-seq 150bp reads
4.2 years ago by
Jingyue
▴ 70
0
votes
0
replies
5.0k
views
Comment:
C: Running Cuffmerge error "duplicate/invalid 'transcript' "
updated 4.5 years ago by
Ram
43k • written 8.6 years ago by
Jingyue
▴ 70
0
votes
0
replies
3.5k
views
Comment:
C: cutadapt cannot work on my fastq files
updated 4.5 years ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
0
votes
1
reply
8.6k
views
Comment:
C: Cuffmerge running error
updated 4.5 years ago by
Ram
43k • written 8.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
8.9k
views
Comment:
C: Differential Peaks Between Replicates
4.6 years ago by
Jingyue
▴ 70
0
votes
1
reply
865
views
ChIP-seq differential binding analysis tools
ChIP-Seq
Diffbind
Csaw
4.6 years ago by
Jingyue
▴ 70
0
votes
0
replies
5.6k
views
Comment:
C: What is the best method ChIPseq differential binding analysis?
4.6 years ago by
Jingyue
▴ 70
0
votes
2
replies
1.8k
views
Chip-seeker heatmap around the peak centers
ChIPseeker
R
updated 4.6 years ago by
zx8754
11k • written 4.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.5k
views
Answer:
A: Performing differential binding analyses between ChIP samples using Deeptools (S
4.7 years ago by
Jingyue
▴ 70
0
votes
1
reply
2.6k
views
Comment:
C: 2 peak files in plotAvgProf2 [ChIPseeker]
4.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.8k
views
Comment:
C: Chip-seeker heatmap around the peak centers
4.7 years ago by
Jingyue
▴ 70
0
votes
1
reply
2.4k
views
Comment:
C: Using Diffbind R-studio
4.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
916
views
Downstream of Csaw differential binding region
ChIP-Seq
csaw
differential binding
peaks
4.7 years ago by
Jingyue
▴ 70
1
vote
0
replies
6.6k
views
Comment:
C: HOMER annotatePeaks - No Annotations
4.8 years ago by
Jingyue
▴ 70
0
votes
0
replies
8.2k
views
Comment:
C: Extremely low mapping rates with bowtie2
5.0 years ago by
Jingyue
▴ 70
0
votes
1
reply
7.1k
views
Comment:
C: Sequence Bias Bismark Output Interpretation
6.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
3.5k
views
Comment:
C: sc-WBGS library GC content, low bismark mapping rate, high CHH%
6.7 years ago by
Jingyue
▴ 70
1
vote
2
replies
3.5k
views
sc-WBGS library GC content, low bismark mapping rate, high CHH%
wgbs
gc content
methylation
updated 6.7 years ago by
Felix Krueger
▴ 40 • written 6.8 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.1k
views
extremely small value on cuffnorm fpkm table
RNA-Seq
normalized-value
cufflinks
fpkm
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Jingyue
▴ 70
1
vote
3
replies
5.0k
views
Running Cuffmerge error "duplicate/invalid 'transcript' "
RNA-Seq
software-error
updated 21 months ago by
Ram
43k • written 8.7 years ago by
Jingyue
▴ 70
0
votes
1
reply
3.0k
views
Comment:
Comment: Ensembl Gtf Cuffmerge Duplicates
updated 19 months ago by
Ram
43k • written 8.7 years ago by
Jingyue
▴ 70
0
votes
0
replies
1.4k
views
multiple mapping using tophat2
RNA-Seq
updated 2.4 years ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
0
votes
0
replies
3.5k
views
Comment:
C: cutadapt cannot work on my fastq files
8.8 years ago by
Jingyue
▴ 70
2
votes
4
replies
3.5k
views
cutadapt cannot work on my fastq files
sequencing
RNA-Seq
updated 2.1 years ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
5
votes
1
reply
2.7k
views
Why Cuffdiff shows "no significant" expression difference in one of sample is 0 and another with a very high value?
Cufflinks
RNA-Seq
updated 17 months ago by
Ram
43k • written 8.8 years ago by
Jingyue
▴ 70
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