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10
votes
2
replies
7.1k
views
getting sscinames in viral blastx query
refseq blast
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 130
2
votes
1
reply
9.9k
views
Answer: Answer: Error installing bcl2fastq 2.20 in make step - Ubuntu 18.04
4.4 years ago by irritable_phd_syndrome ▴ 130
1
vote
1
reply
6.5k
views
Comment: C: Accessing data in within a DESeqDataSet class from DESeq2 library
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 130
0
votes
0
replies
4.5k
views
Comment: C: local blastx server's memory usage
updated 5.9 years ago by 45k • written 9.8 years ago by ▴ 130
0
votes
0
replies
3.1k
views
Comment: C: Using cufflinks : warning cannot find genomic sequence
updated 6.0 years ago by 45k • written 10.2 years ago by ▴ 130
0
votes
0
replies
34k
views
Comment: C: Bioconductor : Setting local install directory for packages
updated 6.0 years ago by 45k • written 10.2 years ago by ▴ 130
1
vote
0
replies
1.8k
views
Answer: A: What are the column names in cuffdiff's count_tracking files?
8.7 years ago by irritable_phd_syndrome ▴ 130
1
vote
1
reply
1.8k
views
What are the column names in cuffdiff's count_tracking files?
RNA-Seq cufflinks cuffdiff
8.7 years ago by irritable_phd_syndrome ▴ 130
0
votes
0
replies
2.4k
views
Cuffcompare : Why is the number of loci different from union of super-loci?
cufflinks cuffcompare
8.8 years ago by irritable_phd_syndrome ▴ 130
0
votes
0
replies
1.3k
views
How do I change the plot range in dispersionPlot() cummeRbund?
cummeRbund
8.8 years ago by irritable_phd_syndrome ▴ 130
0
votes
3
replies
2.6k
views
Tophat2 and Bowtie2 : determining appropriate values for mate-inner-dist and mate-std-dev
RNA-Seq alignment
updated 8.9 years ago by ▴ 20 • written 8.9 years ago by ▴ 130
1
vote
1
reply
3.0k
views
Tophat2 : What is the difference between no-mixed and no-discordant?
RNA-Seq Assembly
updated 8.9 years ago by 105k • written 8.9 years ago by ▴ 130
0
votes
0
replies
2.0k
views
R / cummeRbund : difficulty changing x-axis labels in gg / ggplot class while generating heatmap
R cummeRbund
9.2 years ago by irritable_phd_syndrome ▴ 130
0
votes
1
reply
1.7k
views
Changing values in cummeRbund CuffSet-class in R
RNA-Seq R
updated 9.2 years ago by 12k • written 9.2 years ago by ▴ 130
1
vote
3
replies
4.5k
views
Unmapped paired end reads with confusing sam flag values
sam RNA-Seq
updated 9.4 years ago by 13k • written 9.4 years ago by ▴ 130
0
votes
0
replies
2.5k
views
Comment: C: tophat why are my bam files different if bowtie doesn't care about strandedness
9.4 years ago by irritable_phd_syndrome ▴ 130
0
votes
2
replies
2.5k
views
Comment: C: tophat why are my bam files different if bowtie doesn't care about strandedness
9.4 years ago by irritable_phd_syndrome ▴ 130
2
votes
8
replies
2.5k
views
tophat why are my bam files different if bowtie doesn't care about strandedness?
RNA-Seq tophat
9.4 years ago by irritable_phd_syndrome ▴ 130
0
votes
1
reply
1.9k
views
Creating a fastq generator : how to handle the 3' ends of transcripts.
RNA-Seq transcript
9.4 years ago by irritable_phd_syndrome ▴ 130
4
votes
2
replies
2.8k
views
bimodal distribution of bam mapping quality
alignment tophat RNA-Seq
updated 9.6 years ago by 15k • written 9.6 years ago by ▴ 130
0
votes
0
replies
1.4k
views
multiple taxonomic IDs returned on local blastx server.
blast taxonomic Id
9.7 years ago by irritable_phd_syndrome ▴ 130
7
votes
0
replies
7.1k
views
Answer: A: getting sscinames in viral blastx query
9.8 years ago by irritable_phd_syndrome ▴ 130
5
votes
3
replies
6.5k
views
Accessing data in within a DESeqDataSet class from DESeq2 library
RNA-Seq R
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 130
0
votes
1
reply
1.5k
views
reseq data curation question
refseq
updated 3.3 years ago by 45k • written 9.8 years ago by ▴ 130
9
votes
3
replies
34k
views
Bioconductor : Setting local install directory for packages
RNA-Seq bioconductor
updated 3.3 years ago by 45k • written 10.2 years ago by ▴ 130
0
votes
3
replies
4.5k
views
local blastx server's memory usage
blast
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 130
1
vote
2
replies
5.4k
views
Getting TaxID from local BLAST run
RNA-Seq blast
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 130
0
votes
1
reply
2.3k
views
Toy Tophat Example, finding a single junction from synthetic data
RNA-Seq tophat
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 130
0
votes
1
reply
2.6k
views
Default phred score value for tophat2 and bowtie2
tophat bowtie
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 130
0
votes
1
reply
6.7k
views
Understanding Illumina Adapters
oligos adapters illumina
updated 4.6 years ago by 45k • written 10.0 years ago by ▴ 130
0
votes
1
reply
2.7k
views
trim_galore auto-detecting Illumina adapters
RNA-Seq trim-galore
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 130
1
vote
1
reply
12k
views
What is Deduplication in the context of Sequence Duplication Levels?
RNA-Seq fastqc
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 130
2
votes
3
replies
3.1k
views
Using cufflinks : warning cannot find genomic sequence
RNA-Seq cufflinks
updated 3.2 years ago by 45k • written 10.2 years ago by ▴ 130
3
votes
3
replies
2.3k
views
Gene Expression for mRNA sequencing tutorial
tophat RNA-Seq sequencing samtools
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 130
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