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questions
0
votes
0
replies
595
views
Local blast with multiple databases and multiple files
python
Blast
3.3 years ago by
akang
▴ 110
2
votes
3
replies
913
views
Extracting amino acid positions from a fasta sequence
fasta
python
updated 3.3 years ago by
rpolicastro
13k • written 3.3 years ago by
akang
▴ 110
0
votes
1
reply
1.4k
views
Calculate effective population size (Ne)
Ne
Effective population size
Sequence data
updated 3.3 years ago by
chenyangkang24
▴ 10 • written 5.6 years ago by
akang
▴ 110
0
votes
2
replies
7.1k
views
How to plot LD decay?
LD
r2
updated 5.0 years ago by
Kevin Blighe
87k • written 7.9 years ago by
akang
▴ 110
2
votes
0
replies
1.5k
views
Should the values of pairwise genetic distances and Fst be somewhat similar?
adegenet
R
5.4 years ago by
akang
▴ 110
0
votes
1
reply
1.4k
views
Change the font size of the Y axis of a boxplot
R
adegenet
boxplot
5.4 years ago by
akang
▴ 110
0
votes
0
replies
1.2k
views
Within and between mean group genetic distance greater than 1 with MEGA X
genetic distance
5.4 years ago by
akang
▴ 110
1
vote
3
replies
4.8k
views
Request for BEAGLE tutorial
beagle
SNP
updated 2.6 years ago by
Ram
43k • written 8.4 years ago by
akang
▴ 110
11
votes
27
replies
3.4k
views
7 follow
Restructuring table: rows to column and interleaving columns
transpose
SNP
6.9 years ago by
akang
▴ 110
0
votes
1
reply
2.7k
views
Convert beagle output file to plink
snp
plink
beagle
6.9 years ago by
akang
▴ 110
0
votes
0
replies
3.3k
views
How to determine the haplotypes using Beagle
Beagle
SNP
Haplotype
7.4 years ago by
akang
▴ 110
6
votes
11
replies
7.2k
views
7 follow
Genotype count in a VCF file
SNP
vcf
updated 7.5 years ago by
Jorge Amigo
14k • written 7.5 years ago by
akang
▴ 110
0
votes
2
replies
4.9k
views
How to check and extract if a SNP is heterozygous or homozygous in a vcf file from the SNP ID
VCF
SNP
7.5 years ago by
akang
▴ 110
0
votes
1
reply
2.2k
views
CNV calling and analysis from Affymetrix Axiom 50K SNP chip
SNP
CNV
PennCNV
updated 7.7 years ago by
Ncemami
▴ 10 • written 8.6 years ago by
akang
▴ 110
0
votes
0
replies
1.8k
views
extracting Individuals containing the SNP from a vcf file
SNP
VCF
7.7 years ago by
akang
▴ 110
0
votes
3
replies
3.8k
views
Converting 0 1 2 in a format recognized by plink
plink
recode
genotype
7.7 years ago by
akang
▴ 110
0
votes
4
replies
4.1k
views
Placing labels in the plot
R
Admixture
Plot
Label
7.7 years ago by
akang
▴ 110
9
votes
8
replies
8.6k
views
How to increase the resolution of the figures for publication
Publication
Figures
7.7 years ago by
akang
▴ 110
0
votes
0
replies
2.8k
views
Deleting the Individuals from genlight/genind object in adegenet
SNP
R
8.1 years ago by
akang
▴ 110
2
votes
1
reply
2.7k
views
Phylogenetic tree in Adegenet
Adegenet
Phylogenetic Tree
Plink
8.1 years ago by
akang
▴ 110
0
votes
4
replies
4.1k
views
Population-wise decay of linkage disequilibrium (LD)
Plink
plot
LD
8.1 years ago by
akang
▴ 110
0
votes
2
replies
1.7k
views
Correlation between different files
R
correlation
8.2 years ago by
akang
▴ 110
0
votes
0
replies
2.3k
views
How to merge two illumina 50k Bovine beadchip data sets. The two datasets have SNP id in different formats.
illumina
SNP
Merge
genotype
updated 21 months ago by
Ram
43k • written 8.3 years ago by
akang
▴ 110
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