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0
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0
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1.3k
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Comment: Comment: No annotation peaks when running homer
3.0 years ago by Lila M ★ 1.2k
0
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2
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1.3k
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No annotation peaks when running homer
homer peaks tss
3.0 years ago by Lila M ★ 1.2k
0
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1
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1.0k
views
Where to download raw counts (RNAseq) and breakpoints coordinates (cancer related) for testing?
RNAseq cancer
updated 13 months ago by 43k • written 3.1 years ago by ★ 1.2k
1
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0
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555
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What is the best approach to correlate expression levels, mutated genes and clinical variables
RNA-Seq correlation mutation
3.2 years ago by Lila M ★ 1.2k
0
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0
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582
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Comment: C: best way to analyze a subset of DE genes
3.2 years ago by Lila M ★ 1.2k
0
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1
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582
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Comment: C: best way to analyze a subset of DE genes
3.2 years ago by Lila M ★ 1.2k
0
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4
replies
582
views
best way to analyze a subset of DE genes
RNA-Seq DESeq expression gene
3.2 years ago by Lila M ★ 1.2k
1
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1
reply
2.6k
views
Comment: C: LEfSe for multiple samples
3.2 years ago by Lila M ★ 1.2k
1
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1
reply
2.6k
views
Comment: C: LEfSe for multiple samples
3.2 years ago by Lila M ★ 1.2k
4
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2
replies
5.8k
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problems installing HTSeq
RNA-Seq HTSeq DEXSeq
updated 3.2 years ago by 20 • written 7.0 years ago by ★ 1.2k
0
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0
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1.2k
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Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
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0
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1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
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1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
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1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
votes
0
replies
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
votes
1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
1
vote
18
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1.2k
views
problem when create an expression matrix using a table
RNA-Seq software error R expression
updated 3.2 years ago by 13k • written 3.2 years ago by ★ 1.2k
0
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1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
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1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
votes
1
reply
1.2k
views
Comment: C: problem when create an expression matrix using a table
3.2 years ago by Lila M ★ 1.2k
0
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0
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864
views
Comment: C: How to do a DESq analysis using a table with raw counts or normalized counts
3.2 years ago by Lila M ★ 1.2k
4
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2
replies
864
views
How to do a DESq analysis using a table with raw counts or normalized counts
R RNA-Seq DESeq expersion
updated 3.2 years ago by 13k • written 3.2 years ago by ★ 1.2k
0
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0
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697
views
Comment: C: statitistical question: how can I say if there is a difference in the gene that
3.4 years ago by Lila M ★ 1.2k
0
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2
replies
697
views
statitistical question: how can I say if there is a difference in the gene that fall inside/outside an especific region?
correlation interdependence gene distance
3.4 years ago by Lila M ★ 1.2k
0
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0
replies
987
views
Comment: C: how to calculate distance from a single nucleotide position to a peak
3.4 years ago by Lila M ★ 1.2k
3
votes
2
replies
987
views
how to calculate distance from a single nucleotide position to a peak
ChIP-Seq peak distance genome
updated 3.4 years ago by 35k • written 3.4 years ago by ★ 1.2k
4
votes
5
replies
1.7k
views
How to compare expression in gene list
expresion statistic R
updated 3.6 years ago by 20 • written 7.1 years ago by ★ 1.2k
15
votes
15
replies
6.0k
views
error while reading bigwig files in computeMatrix (deeptools)
deeptools computeMatrix bigwig coverage
updated 3.0 years ago by • 0 • written 5.3 years ago by ★ 1.2k
6
votes
8
replies
4.7k
views
How to smooth (ggplot2) 3 samples in the same plot
R ggplot2 smooth plot ChIP-Seq
updated 4.2 years ago by 20 • written 7.3 years ago by ★ 1.2k
0
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1
reply
3.2k
views
Comment: C: how to compare 2 fasta sequences with perl
updated 4.5 years ago by 43k • written 8.6 years ago by ★ 1.2k
0
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0
replies
1.0k
views
How to identify confunders covariates in metagenomic analysis
metagenomic confunding multivariate Maaslin
4.5 years ago by Lila M ★ 1.2k
0
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0
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1.2k
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Comment: C: re sampling for unbalanced samples
4.6 years ago by Lila M ★ 1.2k
0
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1
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1.2k
views
Comment: A: re sampling for unbalanced samples
4.6 years ago by Lila M ★ 1.2k
0
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7
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1.2k
views
re sampling for unbalanced samples
resamplig unbalanced samples
4.6 years ago by Lila M ★ 1.2k
0
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1
reply
1.2k
views
Comment: A: re sampling for unbalanced samples
4.6 years ago by Lila M ★ 1.2k
0
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0
replies
1.3k
views
best way to do a boxplot for abundnace matrix (microbiome data)
abundance microbiome boxplot ZIBR
4.7 years ago by Lila M ★ 1.2k
0
votes
1
reply
924
views
Comment: C: How to analyze aCGH data in R?
4.7 years ago by Lila M ★ 1.2k
0
votes
3
replies
924
views
How to analyze aCGH data in R?
aCGH microarray
4.7 years ago by Lila M ★ 1.2k
0
votes
1
reply
818
views
How to sumarize longotudinal data by patients and plot it?
longitudinal data summary plot
4.8 years ago by Lila M ★ 1.2k
0
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0
replies
756
views
how to Dirichlet-multinomial mixture model over Bracken ssp abundance?
Bracken metagenomics microbiome Dirichlet model
4.8 years ago by Lila M ★ 1.2k
0
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1
reply
1.4k
views
Comment: C: how to plot an abundance table with ssp from metagenominc data
4.8 years ago by Lila M ★ 1.2k
0
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3
replies
1.4k
views
how to plot an abundance table with ssp from metagenominc data
OTUs metagenomic microbiome
updated 4.8 years ago by 3.2k • written 4.8 years ago by ★ 1.2k
0
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1
reply
15k
views
Comment: C: How to do FPKM differential analysis?
4.8 years ago by Lila M ★ 1.2k
2
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1
reply
15k
views
Answer: C: How to do FPKM differential analysis?
4.8 years ago by Lila M ★ 1.2k
1
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1
reply
1.6k
views
Comment: C: Differential network analysis for two treatments
4.8 years ago by Lila M ★ 1.2k
0
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0
replies
3.9k
views
Answer: A: Annotate .bed file with gene names and exon
4.8 years ago by Lila M ★ 1.2k
1
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0
replies
2.0k
views
Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
4.8 years ago by Lila M ★ 1.2k
0
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1
reply
2.0k
views
Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
4.8 years ago by Lila M ★ 1.2k
3
votes
0
replies
8.1k
views
Comment: C: RNA-Seq: Getting Started with Kallisto
4.8 years ago by Lila M ★ 1.2k
2
votes
0
replies
4.4k
views
Comment: C: How to use htseq-count with several samples ?
4.8 years ago by Lila M ★ 1.2k
443 results • Page 3 of 9
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