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3
votes
6
replies
7.2k
views
Download all chip-seq data of a cell type in ENCODE
ChIP-Seq
updated 2.4 years ago by 150k • written 8.7 years ago by ▴ 180
0
votes
1
reply
19k
views
Comment: Comment: Pararellization in GATK 4
3.5 years ago by izzy.yichao.cai ▴ 180
11
votes
21
replies
12k
views
6 follow
How to properly combine two bam files of a paired-end data
sequencing Paired-end
updated 3.6 years ago by • 0 • written 8.4 years ago by ▴ 180
0
votes
0
replies
12k
views
Comment: Comment: MuTect2 VCF file
3.7 years ago by izzy.yichao.cai ▴ 180
6
votes
9
replies
7.9k
views
6 follow
Merge two bigwig(+/- strand) files from RNA-seq
RNA-Seq next-gen sequencing
updated 15 months ago by ▴ 40 • written 7.8 years ago by ▴ 180
0
votes
0
replies
1.6k
views
Max retries exceed error in using API of NCBI dbSNP
SNP
updated 5.7 years ago by 20 • written 5.7 years ago by ▴ 180
0
votes
1
reply
5.1k
views
Comment: C: Kallisto will not produce .bam files
6.3 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
5.1k
views
Comment: C: Kallisto will not produce .bam files
6.3 years ago by izzy.yichao.cai ▴ 180
2
votes
4
replies
2.2k
views
Which software to use to map 100bp DNA sequence to genome
ChIP-Seq
updated 6.8 years ago by ★ 2.1k • written 9.0 years ago by ▴ 180
1
vote
5
replies
9.0k
views
Effective genome size of UCSC hg38
ChIP-Seq
updated 7.0 years ago by ▴ 90 • written 8.9 years ago by ▴ 180
1
vote
0
replies
1.4k
views
Comment: C: How to align reads to only one strand on a haploid reference genome?
7.2 years ago by izzy.yichao.cai ▴ 180
1
vote
2
replies
1.4k
views
How to align reads to only one strand on a haploid reference genome?
ChIP-Seq sequencing alignment genome
7.2 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
1.2k
views
Interaction calling using contact matrix
next-gen sequencing
7.8 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
7.9k
views
Comment: C: Merge two bigwig(+/- strand) files from RNA-seq
7.8 years ago by izzy.yichao.cai ▴ 180
1
vote
1
reply
7.9k
views
Comment: C: Merge two bigwig(+/- strand) files from RNA-seq
7.8 years ago by izzy.yichao.cai ▴ 180
1
vote
4
replies
2.4k
views
Weird Kmer at 5' of read 1 in paired-end RNA-seq
RNA-Seq sequencing next-gen
7.9 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.4k
views
Comment: C: Weird Kmer at 5' of read 1 in paired-end RNA-seq
7.9 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
1.5k
views
PET sequencing data analysis
sequencing
updated 8.3 years ago by 20 • written 8.4 years ago by ▴ 180
0
votes
1
reply
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
12k
views
Comment: C: How to properly combine two bam files of a paired-end data
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.4k
views
Comment: C: Problem when combine two sam file toghther
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
2.4k
views
Problem when combine two sam file toghther
sequencing
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
3.9k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
3.9k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
3.9k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
8.4 years ago by izzy.yichao.cai ▴ 180
1
vote
6
replies
3.9k
views
Can't convert pair-end bam to bedpe using bedtools bamtobed
sequencing
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
16k
views
Comment: C: Can't convert paired end BAM to bed using bedtools
8.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
2
votes
17
replies
2.8k
views
Which statistical test should be applied in the association gene list
gene
updated 8.5 years ago by 28k • written 8.5 years ago by ▴ 180
0
votes
1
reply
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
3
votes
1
reply
2.8k
views
Non-infinite value in violin plot
R
8.5 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.8k
views
Comment: C: Which statistical test should be applied in the association gene list
8.5 years ago by izzy.yichao.cai ▴ 180
4
votes
4
replies
12k
views
ChIP-seq peak calling & visualized in IGV
ChIP-Seq alignment genome
updated 8.5 years ago by ▴ 260 • written 8.9 years ago by ▴ 180
1
vote
0
replies
6.5k
views
Difference between blastp and phi-blast
genome
8.5 years ago by izzy.yichao.cai ▴ 180
15
votes
6
replies
7.9k
views
using bedtools to find the intersect of bedpe and bed
genome
updated 8.6 years ago by ▴ 20 • written 8.8 years ago by ▴ 180
0
votes
1
reply
7.2k
views
Comment: C: Download all chip-seq data of a cell type in ENCODE
8.7 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
7.2k
views
Comment: C: Download all chip-seq data of a cell type in ENCODE
8.7 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
7.9k
views
Comment: C: using bedtools to find the intersect of bedpe and bed
8.8 years ago by izzy.yichao.cai ▴ 180
2
votes
1
reply
6.0k
views
GSEA for RNA seq
RNA-Seq
updated 8.8 years ago by 20 • written 8.9 years ago by ▴ 180
2
votes
2
replies
3.1k
views
How to decide H3K27me3 peaks in promoter region
ChIP-Seq
updated 8.8 years ago by ★ 3.2k • written 8.8 years ago by ▴ 180
0
votes
0
replies
3.4k
views
Comment: C: Cant launch GSEA from web application using Ubuntu
8.9 years ago by izzy.yichao.cai ▴ 180
1
vote
4
replies
3.4k
views
Cant launch GSEA from web application using Ubuntu
gene
updated 8.9 years ago by 165k • written 8.9 years ago by ▴ 180
0
votes
0
replies
3.4k
views
Comment: C: Cant launch GSEA from web application using Ubuntu
8.9 years ago by izzy.yichao.cai ▴ 180
55 results • Page 1 of 2
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