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questions
1
vote
6
replies
2.2k
views
Counting intronic reads in bulk RNA-seq
rna-seq
updated 15 months ago by
swbarnes2
14k • written 15 months ago by
John Ma
▴ 310
2
votes
3
replies
1.1k
views
Which to learn: TensorFlow or PyTorch?
PyTorch
machine-learning
TensorFlow
deep-learning
2.5 years ago by
John Ma
▴ 310
1
vote
1
reply
1.3k
views
Does a no-normal pipeline exist for MuSiC?
MuSiC
6.2 years ago by
John Ma
▴ 310
0
votes
0
replies
990
views
How likely do cDNAs with start-loss variants appear in mRNA-seq?
RNA-Seq
rna-seq
6.8 years ago by
John Ma
▴ 310
3
votes
7
replies
2.4k
views
Strategies to call variants from a cancer sample
SNP
next-gen
updated 6.8 years ago by
d-cameron
★ 2.9k • written 6.8 years ago by
John Ma
▴ 310
0
votes
3
replies
3.0k
views
How to get sequencing depths from VCF with Rsamtools
R
pindel
Rsamtools
updated 7.1 years ago by
Pierre Lindenbaum
163k • written 7.2 years ago by
John Ma
▴ 310
0
votes
0
replies
1.1k
views
Search VCF by ID in Python
SNP
python
7.2 years ago by
John Ma
▴ 310
1
vote
3
replies
2.7k
views
Converting MuTect v1 text outputs to VCF
snp
MuTect
VCF
7.2 years ago by
John Ma
▴ 310
4
votes
5
replies
5.0k
views
Mapping between genomic coordinates to transcriptomic coordinates
vcf
gff
gtf
SNP
updated 7.3 years ago by
cmdcolin
★ 3.9k • written 7.4 years ago by
John Ma
▴ 310
1
vote
1
reply
1.7k
views
TFBS ChIP-Seq: No Cross-correlation Peaks other than Read Length: Is it normal?
ChIP-Seq
updated 7.5 years ago by
Devon Ryan
104k • written 7.5 years ago by
John Ma
▴ 310
4
votes
4
replies
5.8k
views
Is log-transformation needed to calculate Euclidean distance metric from FPKM/TPM?
RNA-Seq
clustering
distance metric
FPKM
TPM
updated 7.5 years ago by
Petr Ponomarenko
★ 2.8k • written 7.5 years ago by
John Ma
▴ 310
4
votes
1
reply
2.3k
views
Adding Coverage Stats into MuTect2 output VCFs
sequencing
SNP
updated 8.2 years ago by
gil.hornung
▴ 100 • written 8.3 years ago by
John Ma
▴ 310
12 results • Page
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