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Comment: Comment: random list of coordinates of different lengths
18 months ago by mmmmcandrew ▴ 190
3
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1
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699
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Answer: Answer: random list of coordinates of different lengths
18 months ago by mmmmcandrew ▴ 190
0
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0
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1.3k
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Comment: Comment: Convert per base bedgraph to Bed format
3.1 years ago by mmmmcandrew ▴ 190
1
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0
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1.4k
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Comment: Comment: exon.bed file for coverage
3.1 years ago by mmmmcandrew ▴ 190
0
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0
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1.4k
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Answer: Answer: exon.bed file for coverage
3.1 years ago by mmmmcandrew ▴ 190
2
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1
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1.3k
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Answer: Answer: Convert per base bedgraph to Bed format
3.1 years ago by mmmmcandrew ▴ 190
0
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0
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1.4k
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Comment: Comment: exon.bed file for coverage
3.1 years ago by mmmmcandrew ▴ 190
0
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0
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3.0k
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Comment: C: Comparing gene ontology for two lists of genes
3.9 years ago by mmmmcandrew ▴ 190
7
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5
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3.0k
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Comparing gene ontology for two lists of genes
GO
updated 3.9 years ago by ▴ 60 • written 3.9 years ago by ▴ 190
0
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1
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3.0k
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Comment: C: Comparing gene ontology for two lists of genes
3.9 years ago by mmmmcandrew ▴ 190
4
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9
replies
4.8k
views
Sorting heatmaps by gene expression
RNA-Seq MNase-Seq
updated 6.6 years ago by ▴ 180 • written 7.4 years ago by ▴ 190
0
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0
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1.8k
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Comment: C: Filter for regions containing large stretches of missing data
6.9 years ago by mmmmcandrew ▴ 190
4
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5
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1.8k
views
Filter for regions containing large stretches of missing data
deeptools computematrix plotheatmap missing data
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 190
2
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1
reply
1.6k
views
Making a box/density plot for G/C content at millions of genomic locations?
boxplot GC content
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 190
5
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2
replies
5.0k
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Appropriate statistical test for overlap analyses?
statistics overlap bedtools chi square
updated 7.0 years ago by 54k • written 7.0 years ago by ▴ 190
0
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0
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6.3k
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Answer: A: Table browser +/- 2Kb of TSS export
7.0 years ago by mmmmcandrew ▴ 190
3
votes
2
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5.5k
views
Answer: Answer: how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
7.0 years ago by mmmmcandrew ▴ 190
0
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0
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1.7k
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Comment: C: gene expression classification
7.0 years ago by mmmmcandrew ▴ 190
3
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0
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1.4k
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Answer: A: Depleting CTCF sites from interval file
7.0 years ago by mmmmcandrew ▴ 190
0
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0
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3.9k
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Comment: C: Output bed file region sizes as histogram
7.0 years ago by mmmmcandrew ▴ 190
0
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0
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3.9k
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Comment: C: Output bed file region sizes as histogram
7.0 years ago by mmmmcandrew ▴ 190
0
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0
replies
3.9k
views
Comment: C: Output bed file region sizes as histogram
7.0 years ago by mmmmcandrew ▴ 190
7
votes
10
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3.9k
views
Output bed file region sizes as histogram
bed bedtools bedops histogram
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 190
0
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1
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3.9k
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Comment: C: Output bed file region sizes as histogram
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.9k
views
Comment: C: Output bed file region sizes as histogram
7.0 years ago by mmmmcandrew ▴ 190
1
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1
reply
1.7k
views
Answer: A: gene expression classification
7.0 years ago by mmmmcandrew ▴ 190
0
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0
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2.3k
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Comment: C: Generate bed file containing regions with no bigwig coverage
7.0 years ago by mmmmcandrew ▴ 190
3
votes
3
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2.3k
views
Generate bed file containing regions with no bigwig coverage
bigwig bed
updated 7.0 years ago by 161k • written 7.0 years ago by ▴ 190
0
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0
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3.0k
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Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
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0
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2.3k
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Comment: C: Generate bed file containing regions with no bigwig coverage
7.0 years ago by mmmmcandrew ▴ 190
0
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1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
1
reply
3.0k
views
Comment: C: Creating coverage files containing paired-end fragments of particular sizes
7.0 years ago by mmmmcandrew ▴ 190
0
votes
14
replies
3.0k
views
Creating coverage files containing paired-end fragments of particular sizes
BAM bigwig wig bed paired-end
7.0 years ago by mmmmcandrew ▴ 190
4
votes
2
replies
2.0k
views
Finding minima from bigwig in specific regions from bed file
bigwig bed
updated 7.1 years ago by 35k • written 7.1 years ago by ▴ 190
0
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1
reply
2.5k
views
Comment: C: Calculating nucleosome dyad densities
7.5 years ago by mmmmcandrew ▴ 190
2
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3
replies
2.5k
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Calculating nucleosome dyad densities
MNase-seq bigwig bam coverage dyad density
7.5 years ago by mmmmcandrew ▴ 190
6
votes
6
replies
3.4k
views
Extracting data from bigWig/BED using threshold?
next-gen sequencing
7.6 years ago by mmmmcandrew ▴ 190
3
votes
0
replies
3.4k
views
Answer: A: Extracting data from bigWig/BED using threshold?
7.6 years ago by mmmmcandrew ▴ 190
0
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2
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3.4k
views
Comment: C: Extracting data from bigWig/BED using threshold?
7.6 years ago by mmmmcandrew ▴ 190
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