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Comment: C: Retrieving Phylop Scores Using R
5.5 years ago by rbronste ▴ 420
0
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1
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7.6k
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Comment: C: Retrieving Phylop Scores Using R
5.5 years ago by rbronste ▴ 420
0
votes
1
reply
7.6k
views
Comment: C: Retrieving Phylop Scores Using R
5.5 years ago by rbronste ▴ 420
4
votes
2
replies
3.5k
views
Protein coding mm10 refseq bed
refseq bed mm10
updated 5.5 years ago by ★ 3.7k • written 5.5 years ago by ▴ 420
1
vote
4
replies
1.6k
views
Consensus motif of closely related TFs
motif ChIP-Seq transcription factor sequence PWM
updated 5.5 years ago by ▴ 430 • written 5.6 years ago by ▴ 420
0
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1
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1.5k
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Comment: C: Parsing AME tsv file
5.5 years ago by rbronste ▴ 420
5
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7
replies
1.5k
views
Parsing AME tsv file
meme ame tsv bed motif
5.5 years ago by rbronste ▴ 420
0
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1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
5.5 years ago by rbronste ▴ 420
0
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1
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16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
5.5 years ago by rbronste ▴ 420
0
votes
0
replies
1.5k
views
Comment: C: BEDOPS sort-bed BED_LINE_LEN question
5.6 years ago by rbronste ▴ 420
1
vote
2
replies
1.5k
views
BEDOPS sort-bed BED_LINE_LEN question
bedops bed sort-bed intervals
5.6 years ago by rbronste ▴ 420
0
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1
reply
2.5k
views
Comment: C: Installing and running pyGenomeTracks
5.6 years ago by rbronste ▴ 420
0
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0
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2.5k
views
Comment: C: Installing and running pyGenomeTracks
5.6 years ago by rbronste ▴ 420
0
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0
replies
2.5k
views
Comment: C: Installing and running pyGenomeTracks
5.6 years ago by rbronste ▴ 420
3
votes
1
reply
844
views
Correlating putative enhancer elements with gene expression
RNA-Seq ATAC-seq enhancer gene expression
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by ▴ 420
0
votes
1
reply
1.6k
views
FIMO vs AME - true positive and false positives across search tools
meme ame fimo motif
updated 5.6 years ago by 20 • written 5.7 years ago by ▴ 420
0
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0
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1.6k
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Comment: C: Consensus motif of closely related TFs
5.6 years ago by rbronste ▴ 420
13
votes
30
replies
8.5k
views
10 follow
BagFoot TF foot printing
R bagfoot bagfootr ChIP-Seq
updated 5.7 years ago by ▴ 20 • written 6.5 years ago by ▴ 420
0
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0
replies
1.6k
views
Comment: C: FIMO output that preserves padj values
5.7 years ago by rbronste ▴ 420
3
votes
5
replies
1.6k
views
FIMO output that preserves padj values
ChIP-Seq motifs FIMO MEME DESeq2
5.7 years ago by rbronste ▴ 420
0
votes
0
replies
1.4k
views
bwtool stalled liftover
bwtool bigwig liftover
5.7 years ago by rbronste ▴ 420
0
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1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
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1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
votes
1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
votes
1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
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1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
votes
0
replies
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
5
votes
6
replies
2.5k
views
Common gene names list to BED with +/- TSS intervals
RNA-Seq
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 420
0
votes
1
reply
6.3k
views
Comment: C: Table browser +/- 2Kb of TSS export
5.7 years ago by rbronste ▴ 420
0
votes
1
reply
2.5k
views
Comment: C: Common gene names list to BED with +/- TSS intervals
5.7 years ago by rbronste ▴ 420
0
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1
reply
3.0k
views
Comment: C: Closest gene to set of intervals
5.7 years ago by rbronste ▴ 420
0
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0
replies
3.0k
views
Comment: C: Closest gene to set of intervals
5.7 years ago by rbronste ▴ 420
0
votes
1
reply
3.0k
views
Comment: C: Closest gene to set of intervals
5.7 years ago by rbronste ▴ 420
0
votes
1
reply
1.3k
views
RSAT gives strange motif calls
RSAT motif ChIP-Seq
updated 5.9 years ago by ▴ 10 • written 6.2 years ago by ▴ 420
1
vote
4
replies
3.1k
views
bwtool matrix error - invalid signed integer
bwtool matrix software error
updated 5.9 years ago by 20 • written 7.3 years ago by ▴ 420
2
votes
5
replies
2.7k
views
Motif database of choice
motif RSAT ChIP-Seq
updated 6.0 years ago by • 0 • written 6.7 years ago by ▴ 420
2
votes
2
replies
2.1k
views
FIMO target coordinates in fasta file
fimo meme motif fasta
updated 6.0 years ago by 82k • written 6.3 years ago by ▴ 420
1
vote
2
replies
1.2k
views
Fimo output for classes of TFs from specific database
ChIP-Seq fimo meme
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 420
6
votes
11
replies
3.0k
views
blastn errors following building of database
blast blastn makeblastdb
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 420
0
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1
reply
3.0k
views
Comment: C: blastn errors following building of database
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
3.0k
views
Comment: C: blastn errors following building of database
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
3.0k
views
Comment: C: blastn errors following building of database
6.0 years ago by rbronste ▴ 420
0
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0
replies
3.0k
views
Comment: C: blastn errors following building of database
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
3.0k
views
Comment: C: blastn errors following building of database
6.0 years ago by rbronste ▴ 420
3
votes
3
replies
2.2k
views
Extracting the exact motif location from FIMO
meme fimo motif ChIP-Seq
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 420
0
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1
reply
3.1k
views
Comment: C: FIMO output to bed
6.1 years ago by rbronste ▴ 420
4
votes
8
replies
5.0k
views
samtools faidx error
samtools faidx
updated 6.1 years ago by ▴ 10 • written 6.8 years ago by ▴ 420
0
votes
1
reply
1.0k
views
Comment: C: Adjusting for uneven Nextseq loading
6.1 years ago by rbronste ▴ 420
1
vote
3
replies
1.0k
views
Adjusting for uneven Nextseq loading
NextSeq fastq sequencing ChIP-Seq
updated 6.1 years ago by 6.4k • written 6.1 years ago by ▴ 420
0
votes
1
reply
1.0k
views
Comment: C: Excluding intervals with repeats
6.1 years ago by rbronste ▴ 420
291 results • Page 3 of 6
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