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253
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Comment: Comment: RangedSummarizedExperiment to Sparse Matrix
15 days ago by rbronste ▴ 410
1
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3
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253
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RangedSummarizedExperiment to Sparse Matrix
dgCMatrix sparse RangedSummarizedExperiment matrix
updated 15 days ago by 71k • written 15 days ago by ▴ 410
0
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0
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483
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Comment: Comment: Combining TF PWMs
11 weeks ago by rbronste ▴ 410
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0
replies
483
views
Comment: Comment: Combining TF PWMs
12 weeks ago by rbronste ▴ 410
1
vote
3
replies
483
views
Combining TF PWMs
TF Jaspar motif PWM
11 weeks ago by rbronste ▴ 410
0
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0
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181
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Signac MACS2 peak shape question
snATAC-seq snRNA-seq signac multiome seurat
7 months ago by rbronste ▴ 410
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0
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361
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Comment: Comment: Adding to 10X genome.fa and genes.gtf files
10 months ago by rbronste ▴ 410
2
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2
replies
361
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Adding to 10X genome.fa and genes.gtf files
10x Genomics multiome scRNA-seq
10 months ago by rbronste ▴ 410
0
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0
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373
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Comment: Comment: Identifying rosa locus expression in snRNA-seq
11 months ago by rbronste ▴ 410
0
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0
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373
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Comment: Comment: Identifying rosa locus expression in snRNA-seq
12 months ago by rbronste ▴ 410
0
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3
replies
373
views
Identifying rosa locus expression in snRNA-seq
rosa locus snRNA-seq reporter scRNA-seq
11 months ago by rbronste ▴ 410
2
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3
replies
2.3k
views
liftOver narrowPeak file
liftOver Assembly
updated 17 months ago by ▴ 30 • written 6.1 years ago by ▴ 410
1
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2
replies
2.8k
views
BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops
updated 2.5 years ago by ▴ 20 • written 5.8 years ago by ▴ 410
3
votes
12
replies
5.7k
views
Blacklisted regions for mm10
ChIP-Seq blacklisted regions
updated 2.5 years ago by 71k • written 5.9 years ago by ▴ 410
4
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3
replies
714
views
Seurat code availability for published papers
seurat scRNA-seq
2.9 years ago by rbronste ▴ 410
5
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2
replies
2.6k
views
Official gene symbol list to BED file
bed gene symbol DEseq2
updated 3.1 years ago by ▴ 20 • written 5.2 years ago by ▴ 410
0
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1
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921
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Comment: C: grep sorting question
3.1 years ago by rbronste ▴ 410
0
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0
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921
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Comment: C: grep sorting question
3.1 years ago by rbronste ▴ 410
0
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1
reply
921
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Comment: C: grep sorting question
3.1 years ago by rbronste ▴ 410
3
votes
11
replies
921
views
grep sorting question
grep awk sed bash unix
updated 3.1 years ago by 38k • written 3.1 years ago by ▴ 410
0
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1
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921
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Comment: C: grep sorting question
3.1 years ago by rbronste ▴ 410
0
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1
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4.1k
views
Comment: Comment: multiple bed - merge regions IF overlapping more than xx percent of size
updated 11 weeks ago by 38k • written 3.1 years ago by ▴ 410
0
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0
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580
views
ggplot2 loess curve application to 2 dataframes
ggplot2 ggplot
3.2 years ago by rbronste ▴ 410
5
votes
3
replies
1.9k
views
EnhancedVolcano R pdf export size
EnhancedVolcano volcano plot R
updated 3.2 years ago by 11k • written 3.2 years ago by ▴ 410
0
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1
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1.9k
views
Comment: C: EnhancedVolcano R pdf export size
3.2 years ago by rbronste ▴ 410
0
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0
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550
views
Comment: C: Difficult filtering scenario of BED file
3.2 years ago by rbronste ▴ 410
2
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3
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550
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Difficult filtering scenario of BED file
awk sed grep
3.2 years ago by rbronste ▴ 410
4
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6
replies
609
views
awk for interval midpoints and length
awk
updated 3.2 years ago by 11k • written 3.2 years ago by ▴ 410
0
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1
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2.0k
views
Comment: C: How to extend variable length intervals to the same final length?
3.2 years ago by rbronste ▴ 410
1
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0
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7.6k
views
Comment: C: Enhanced Volcano removal of labels
3.2 years ago by rbronste ▴ 410
12
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4
replies
7.6k
views
Enhanced Volcano removal of labels
EnhancedVolcano volcano plot
updated 3.2 years ago by 85k • written 3.2 years ago by ▴ 410
0
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0
replies
7.6k
views
Comment: C: Enhanced Volcano removal of labels
3.2 years ago by rbronste ▴ 410
0
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1
reply
3.3k
views
Comment: C: Color labeled points in Enhanced Volcano
3.3 years ago by rbronste ▴ 410
4
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5
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3.3k
views
Color labeled points in Enhanced Volcano
volcano plot EnhancedVolcano
3.3 years ago by rbronste ▴ 410
0
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1
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3.3k
views
Comment: C: Color labeled points in Enhanced Volcano
3.3 years ago by rbronste ▴ 410
8
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3
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2.1k
views
Adding ggplot2 chromosome position variable
ggplot2 plot genomic ranges R
updated 3.3 years ago by ★ 3.4k • written 3.4 years ago by ▴ 410
2
votes
2
replies
610
views
Plotting matrix of values around specific genomic position
R data.frame matrix ggplot2
updated 3.3 years ago by 11k • written 3.3 years ago by ▴ 410
0
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1
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1.9k
views
Comment: C: Common gene names list to BED with +/- TSS intervals
3.3 years ago by rbronste ▴ 410
0
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1
reply
640
views
Comment: C: Combining two BED files based on shared criteria
3.3 years ago by rbronste ▴ 410
1
vote
3
replies
640
views
Combining two BED files based on shared criteria
bedtools bedops bed interval
3.3 years ago by rbronste ▴ 410
0
votes
1
reply
10k
views
Comment: C: Color points on an Enhanced Volcano Plot based on external intervals
3.4 years ago by rbronste ▴ 410
1
vote
3
replies
10k
views
Color points on an Enhanced Volcano Plot based on external intervals
plotting volcano plot
3.4 years ago by rbronste ▴ 410
0
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1
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8.4k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
3.4 years ago by rbronste ▴ 410
1
vote
1
reply
678
views
Plotting range/type of discordance in alignment data
bowtie2 sequence alignment
3.4 years ago by rbronste ▴ 410
0
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0
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4.1k
views
Comment: C: multiple bed - merge regions IF overlapping more than xx percent of size
3.4 years ago by rbronste ▴ 410
0
votes
1
reply
4.1k
views
Comment: C: multiple bed - merge regions IF overlapping more than xx percent of size
3.4 years ago by rbronste ▴ 410
2
votes
3
replies
2.1k
views
Bowtie2 Error: *.* has more quality values than read characters
bowtie2 fastq software error
updated 3.5 years ago by 20 • written 3.6 years ago by ▴ 410
1
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0
replies
1.1k
views
Comment: C: Limiting interval sizes with awk
3.5 years ago by rbronste ▴ 410
9
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3
replies
1.1k
views
Limiting interval sizes with awk
awk bed bedtools bedops interval
3.5 years ago by rbronste ▴ 410
2
votes
3
replies
2.1k
views
Bamtobed paired mate error
bedtools bedops bamtobed bed
updated 3.5 years ago by 71k • written 3.5 years ago by ▴ 410
279 results • Page 1 of 6
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