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Annotation tools (prokaryotes): prokka vs eggnog
annotations HMM eggnog assembly prokka
updated 4.0 years ago by 154k • written 4.9 years ago by ▴ 50
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3.6k
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Comment: C: LEfSe for multiple samples
4.7 years ago by willnotburn ▴ 50
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4.6k
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Comment: C: microbiomeMarker: microbiome biomarker analysis in R
4.7 years ago by willnotburn ▴ 50
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1
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4.6k
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Comment: C: microbiomeMarker: microbiome biomarker analysis in R
4.7 years ago by willnotburn ▴ 50
0
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1
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4.6k
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Comment: A: microbiomeMarker: microbiome biomarker analysis in R
4.7 years ago by willnotburn ▴ 50
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1
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3.6k
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Comment: C: LEfSe for multiple samples
4.7 years ago by willnotburn ▴ 50
2
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4
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3.6k
views
LEfSe for multiple samples
RNA-Seq metagenomics environmental genomics
updated 4.7 years ago by 35k • written 4.7 years ago by ▴ 50
0
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0
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1.1k
views
Forum: MAGs annotation tools
annotation genome
updated 2.4 years ago by 45k • written 5.8 years ago by ▴ 50
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0
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7.9k
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Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
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1
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7.9k
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Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
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1
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
votes
1
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
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1
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
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0
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
votes
1
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
0
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1
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7.9k
views
Comment: C: Trimming P5 and P7 dual index adapters (and other QC)
5.1 years ago by willnotburn ▴ 50
5
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17
replies
7.9k
views
Trimming P5 and P7 dual index adapters (and other QC)
sequencing trimming QC
updated 3.1 years ago by ▴ 40 • written 5.1 years ago by ▴ 50
1
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1
reply
3.5k
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Parse NCBI XML sample information into a data frame in R
R NCBI XML
6.7 years ago by willnotburn ▴ 50
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0
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5.5k
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Comment: C: assemblers choose high k-mers: what does that mean?
7.4 years ago by willnotburn ▴ 50
6
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2
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5.5k
views
assemblers choose high k-mers: what does that mean?
Assembly metagenomic
7.4 years ago by willnotburn ▴ 50
0
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0
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1.8k
views
What to do with unpaired reads post-trimming?
de-novo trimming htseq mapping metagenomic
7.5 years ago by willnotburn ▴ 50
0
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1
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4.8k
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Comment: C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
7.5 years ago by willnotburn ▴ 50
0
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0
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1.5k
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metagenomic assembly coverage, for multiple samples
metagenomics coverage bowtie2 samtools mpileup
7.5 years ago by willnotburn ▴ 50
2
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1
reply
4.8k
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Comment: C: Any tool to assemble 16S rRNA genes at high resolution from metagenomes?
7.5 years ago by willnotburn ▴ 50
0
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0
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3.7k
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Comment: C: metagenomic assembly has low coverage; what are my options?
7.6 years ago by willnotburn ▴ 50
0
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1
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4.2k
views
Answer: A: shotgun metagenomic data analysis
7.6 years ago by willnotburn ▴ 50
0
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0
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1.9k
views
best CDS prediction tool for online annotation submission
annotation fasta cds prodigal ghostkoala
7.6 years ago by willnotburn ▴ 50
0
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1
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3.7k
views
Comment: C: metagenomic assembly has low coverage; what are my options?
7.6 years ago by willnotburn ▴ 50
0
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1
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3.7k
views
Comment: C: metagenomic assembly has low coverage; what are my options?
7.6 years ago by willnotburn ▴ 50
0
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0
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3.7k
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Comment: C: metagenomic assembly has low coverage; what are my options?
7.6 years ago by willnotburn ▴ 50
0
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1
reply
3.7k
views
Comment: C: metagenomic assembly has low coverage; what are my options?
7.6 years ago by willnotburn ▴ 50
2
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9
replies
3.7k
views
metagenomic assembly has low coverage; what are my options?
metagenomic assembly coverage trimming megahit
updated 7.6 years ago by 35k • written 7.6 years ago by ▴ 50
0
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0
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2.9k
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Answer: A: map both interleaved and orphaned reads to assembly for each sample (with bowtie
7.6 years ago by willnotburn ▴ 50
1
vote
7
replies
2.9k
views
map both interleaved and orphaned reads to assembly for each sample (with bowtie2)
Assembly alignment metagenomics
7.6 years ago by willnotburn ▴ 50
0
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1
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2.9k
views
Comment: C: map both interleaved and orphaned reads to assembly for each sample (with bowtie
7.6 years ago by willnotburn ▴ 50
0
votes
1
reply
2.9k
views
Comment: C: map both interleaved and orphaned reads to assembly for each sample (with bowtie
7.6 years ago by willnotburn ▴ 50
1
vote
1
reply
6.5k
views
Comment: C: pathway mapping using KEGG
8.6 years ago by willnotburn ▴ 50
0
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1
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6.5k
views
Comment: C: pathway mapping using KEGG
8.6 years ago by willnotburn ▴ 50
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