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Comment: Comment: Core_nt database not available to download?
8 months ago by DNAngel ▴ 250
0
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1
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1.9k
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Comment: Comment: Core_nt database not available to download?
8 months ago by DNAngel ▴ 250
0
votes
1
reply
1.9k
views
Comment: Comment: Core_nt database not available to download?
8 months ago by DNAngel ▴ 250
1
vote
7
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1.9k
views
Core_nt database not available to download?
blast ncbi
updated 8 months ago by 151k • written 8 months ago by ▴ 250
4
votes
6
replies
1.3k
views
How to check if all read names are paired properly in paired end fastq.gz files?
samtools illumina paired-end
updated 9 months ago by 4.9k • written 9 months ago by ▴ 250
1
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0
replies
917
views
Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
13 months ago by DNAngel ▴ 250
0
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1
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917
views
Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
13 months ago by DNAngel ▴ 250
1
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3
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917
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Why is DESeq2 normalization making my top feature have identical values across samples?
DESEQ2 WGCNA
13 months ago by DNAngel ▴ 250
0
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0
replies
262
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Should I keep taxa that have 0 counts when calculating alpha diversity?
Shannon-Weiner
13 months ago by DNAngel ▴ 250
0
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0
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1.3k
views
Comment: Comment: Samtools unmapped reads
2.2 years ago by DNAngel ▴ 250
0
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5
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1.3k
views
Samtools unmapped reads
samtools
2.2 years ago by DNAngel ▴ 250
0
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0
replies
1.3k
views
Comment: Comment: Samtools unmapped reads
2.3 years ago by DNAngel ▴ 250
0
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0
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2.1k
views
Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
2.3 years ago by DNAngel ▴ 250
0
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1
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2.1k
views
Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
2.3 years ago by DNAngel ▴ 250
0
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3
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2.1k
views
Samtools mapped and unmapped flags, what is the difference between the flags?
samtools
2.3 years ago by DNAngel ▴ 250
2
votes
2
replies
896
views
How do you get functional/biological role of motifs?
JASPAR
updated 2.3 years ago by 5.1k • written 2.3 years ago by ▴ 250
0
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1
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1.9k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
2.3 years ago by DNAngel ▴ 250
0
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1
reply
1.9k
views
Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
2.3 years ago by DNAngel ▴ 250
0
votes
2
replies
1.9k
views
Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
2.3 years ago by DNAngel ▴ 250
2
votes
8
replies
1.9k
views
How to get names and class information from a list of target IDs from the JASPAR database?
JASPAR
updated 2.3 years ago by 88k • written 2.3 years ago by ▴ 250
0
votes
0
replies
991
views
Comment: Comment: Program to detect cis-regulatory modules for a non model species?
2.5 years ago by DNAngel ▴ 250
0
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0
replies
991
views
Comment: Comment: Program to detect cis-regulatory modules for a non model species?
2.5 years ago by DNAngel ▴ 250
3
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3
replies
991
views
Program to detect cis-regulatory modules for a non model species?
factors transcription
2.5 years ago by DNAngel ▴ 250
0
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1
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1.3k
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Comment: Comment: How do you find transcription factors in a newly sequenced genome?
2.6 years ago by DNAngel ▴ 250
4
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3
replies
1.3k
views
How do you find transcription factors in a newly sequenced genome?
interproscan factors transcription
updated 2.6 years ago by ▴ 20 • written 2.6 years ago by ▴ 250
1
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1
reply
1.6k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.6 years ago by DNAngel ▴ 250
0
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1
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1.6k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.6 years ago by DNAngel ▴ 250
0
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0
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1.6k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.6 years ago by DNAngel ▴ 250
0
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1
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1.6k
views
Comment: Comment: How do you obtain a list of transcription factors from a genome?
2.6 years ago by DNAngel ▴ 250
7
votes
8
replies
1.6k
views
How do you obtain a list of transcription factors from a genome?
transcription-factor
updated 2.2 years ago by 45k • written 2.6 years ago by ▴ 250
0
votes
6
replies
4.7k
views
Confused about which database to use - nt or nr?
blast
updated 2.6 years ago by 11k • written 2.6 years ago by ▴ 250
0
votes
2
replies
907
views
What happened to the SparCC github repository?
sparcc
updated 3.1 years ago by ★ 2.1k • written 3.1 years ago by ▴ 250
0
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0
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5.2k
views
Comment: Comment: WGCNA exportNetworkToCytoscape issue!!
3.4 years ago by DNAngel ▴ 250
2
votes
8
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4.4k
views
Why does Kraken2 not produce taxon percentages with --report flag?
kraken2
updated 3.4 years ago by ▴ 110 • written 4.0 years ago by ▴ 250
0
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0
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730
views
Can I use DESeq2 to analyze my abundance dataset, which also happens to have a lot of zeros?
deseq2
3.6 years ago by DNAngel ▴ 250
0
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0
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3.1k
views
Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
3.6 years ago by DNAngel ▴ 250
0
votes
1
reply
3.1k
views
Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
3.6 years ago by DNAngel ▴ 250
0
votes
4
replies
3.1k
views
Forum: Is there really a difference in blastn -task blastn and -task megablast when dealing with unmapped reads?
blastn
3.6 years ago by DNAngel ▴ 250
0
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0
replies
1.8k
views
Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
3.6 years ago by DNAngel ▴ 250
0
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1
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1.8k
views
Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
3.6 years ago by DNAngel ▴ 250
2
votes
4
replies
1.8k
views
WGCNA, what does it mean if no hub genes are identified?
WGCNA
3.6 years ago by DNAngel ▴ 250
1
vote
0
replies
709
views
R package for determining best model transformation for a dataset?
R
3.7 years ago by DNAngel ▴ 250
0
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1
reply
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
0
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0
replies
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
0
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1
reply
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
0
votes
2
replies
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
0
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0
replies
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
11
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15
replies
4.9k
views
Output of samtools view, what does the third column actually represent?
samtools
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 250
0
votes
2
replies
4.9k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
3.7 years ago by DNAngel ▴ 250
0
votes
0
replies
689
views
How to find out how many reads were used in contig assembly in metaSPADES?
metaspades
3.7 years ago by DNAngel ▴ 250
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