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813
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Answer: Answer: Convert Gene symbol to Ensembl ID
10 weeks ago by vinayjrao ▴ 250
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1
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924
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Answer: Answer: Help with the new nomenclature of multi-nucleotide variants
10 weeks ago by vinayjrao ▴ 250
2
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1
reply
636
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Answer: Answer: wANNOVAR memory error
10 weeks ago by vinayjrao ▴ 250
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259
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Comment: Comment: Visualize and access gvcf/vcf files
10 weeks ago by vinayjrao ▴ 250
1
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0
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323
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Answer: Answer: Filtering VCF files with bcftools
10 weeks ago by vinayjrao ▴ 250
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0
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329
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Comment: Comment: A question about using HISAT2 without biological replicates
11 weeks ago by vinayjrao ▴ 250
1
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2
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329
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A question about using HISAT2 without biological replicates
RNA-seq HISAT2
11 weeks ago by vinayjrao ▴ 250
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0
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1.0k
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Comment: Comment: How to decrypt EGA .crypt files?
8 months ago by vinayjrao ▴ 250
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0
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587
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Comment: Comment: Seeking assistance in scRNA Seq
18 months ago by vinayjrao ▴ 250
0
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2
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587
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Seeking assistance in scRNA Seq
python scRNA-Seq R
18 months ago by vinayjrao ▴ 250
0
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2
replies
635
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Merging bam files
bam merge rna-seq
updated 23 months ago by ★ 1.1k • written 23 months ago by ▴ 250
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0
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454
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Variants in untargeted genes identified after targeted exome sequencing analysis
snp exome
2.6 years ago by vinayjrao ▴ 250
0
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0
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2.1k
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Comment: Comment: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
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0
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2.1k
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Comment: Comment: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
2
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10
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2.1k
views
Unable to overcome troubles in whole exome analysis
exome-seq markduplicates picard
updated 23 months ago by 43k • written 2.6 years ago by ▴ 250
1
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1
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2.1k
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Answer: Answer: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
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0
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2.1k
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Comment: Comment: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
0
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1
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2.1k
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Comment: Comment: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
0
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0
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2.1k
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Comment: Comment: Unable to overcome troubles in whole exome analysis
2.6 years ago by vinayjrao ▴ 250
0
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0
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616
views
How to annotate variants against hs37d5?
SNP annotation
3.1 years ago by vinayjrao ▴ 250
6
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7
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21k
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Calculating fpkm from raw counts
RNA-Seq R fpkm
updated 2.6 years ago by ▴ 10 • written 6.1 years ago by ▴ 250
0
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0
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888
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Is it possible to call variants using cram files?
next-gen sequencing SNP
3.2 years ago by vinayjrao ▴ 250
0
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0
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973
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Unable to convert from cram to bam
SNP software error sequencing next-gen
3.2 years ago by vinayjrao ▴ 250
0
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0
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6.1k
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Comment: C: Issue With CRAM -> BAM -> FASTQ Conversion
3.2 years ago by vinayjrao ▴ 250
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0
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1.7k
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Comment: C: Ignore replacing a comma within quotes
3.2 years ago by vinayjrao ▴ 250
0
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1
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1.7k
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Comment: C: Ignore replacing a comma within quotes
3.2 years ago by vinayjrao ▴ 250
0
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0
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1.7k
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Comment: C: Ignore replacing a comma within quotes
3.2 years ago by vinayjrao ▴ 250
0
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1
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1.7k
views
Comment: C: Ignore replacing a comma within quotes
3.2 years ago by vinayjrao ▴ 250
2
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8
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1.7k
views
Ignore replacing a comma within quotes
sed awk regex
3.2 years ago by vinayjrao ▴ 250
0
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0
replies
1.8k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
3.3 years ago by vinayjrao ▴ 250
0
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1
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1.8k
views
Comment: C: Recalibrating variants in GATK4.1 as compared to GATK3.7
3.3 years ago by vinayjrao ▴ 250
10
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4
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1.8k
views
Recalibrating variants in GATK4.1 as compared to GATK3.7
SNP GATK
updated 3.3 years ago by ★ 4.3k • written 3.3 years ago by ▴ 250
0
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1
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730
views
Comment: C: Compare elements between rows and columns
3.4 years ago by vinayjrao ▴ 250
2
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3
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730
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Compare elements between rows and columns
awk shell RNA-Seq
updated 24 months ago by 43k • written 3.4 years ago by ▴ 250
0
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1
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1.5k
views
Comment: C: Converting CRAM slices to get a CRAM file
3.4 years ago by vinayjrao ▴ 250
3
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4
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1.5k
views
Converting CRAM slices to get a CRAM file
samtools
updated 3.4 years ago by ★ 1.2k • written 3.4 years ago by ▴ 250
0
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0
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2.6k
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Comment: C: Create files in multiple directories via for loop
3.5 years ago by vinayjrao ▴ 250
0
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1
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2.6k
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Comment: C: Create files in multiple directories via for loop
3.5 years ago by vinayjrao ▴ 250
0
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1
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2.6k
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Comment: C: Create files in multiple directories via for loop
3.5 years ago by vinayjrao ▴ 250
0
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1
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2.6k
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Comment: C: Create files in multiple directories via for loop
3.5 years ago by vinayjrao ▴ 250
3
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9
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2.6k
views
Create files in multiple directories via for loop
shell linux
3.5 years ago by vinayjrao ▴ 250
0
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0
replies
2.0k
views
Comment: C: Converting tsv into bam file
3.5 years ago by vinayjrao ▴ 250
1
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3
replies
2.0k
views
Converting tsv into bam file
genome sequencing R linux
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 250
1
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1
reply
1.6k
views
Answer: C: How to login to dowload datasets from EGA - European Genome-phenome Archive?
3.5 years ago by vinayjrao ▴ 250
3
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3
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1.6k
views
How to login to dowload datasets from EGA - European Genome-phenome Archive?
java
3.5 years ago by vinayjrao ▴ 250
1
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1
reply
647
views
Appending output to a vector in R
R
updated 3.6 years ago by 3.2k • written 3.6 years ago by ▴ 250
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0
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2.0k
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Comment: C: Annotating VCF files
3.6 years ago by vinayjrao ▴ 250
0
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3
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2.0k
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Annotating VCF files
snp
3.6 years ago by vinayjrao ▴ 250
0
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1
reply
974
views
Which of the output files of TrimGalore! must I align?
sequencing alignment SNP
3.7 years ago by vinayjrao ▴ 250
0
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0
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1.1k
views
Comment: C: How to annotate variants offline using ANNOVAR?
3.8 years ago by vinayjrao ▴ 250
184 results • Page 1 of 4
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