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Comment: C: scRNA-seq reduction plot for individual group
5.7 years ago by Morris_Chair ▴ 370
0
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1
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2.1k
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Comment: C: scRNA-seq reduction plot for individual group
5.7 years ago by Morris_Chair ▴ 370
0
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2
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2.1k
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Comment: A: scRNA-seq reduction plot for individual group
5.7 years ago by Morris_Chair ▴ 370
6
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9
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2.1k
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scRNA-seq reduction plot for individual group
RNA-Seq R
5.7 years ago by Morris_Chair ▴ 370
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0
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2.1k
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Comment: C: scRNA-seq reduction plot for individual group
5.7 years ago by Morris_Chair ▴ 370
6
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2
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6.9k
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scRNA-seq and mitochondria DNA percentage
RNA-Seq
updated 14 months ago by 153k • written 5.8 years ago by ▴ 370
5
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1
reply
4.3k
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GSEA and normalized reads count
RNA-Seq DESeq2 GSEA
5.9 years ago by Morris_Chair ▴ 370
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0
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1.4k
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Comment: C: convert MSTRG to human-readable format
5.9 years ago by Morris_Chair ▴ 370
2
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1
reply
5.4k
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computeMatrix bed format files
ChIP-Seq deeptools
5.9 years ago by Morris_Chair ▴ 370
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0
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2.8k
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Comment: C: IGV crashing on Mac
5.9 years ago by Morris_Chair ▴ 370
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0
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2.5k
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Comment: C: (Galaxy) MACS2 peaks threshold
6.0 years ago by Morris_Chair ▴ 370
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1
reply
2.5k
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Comment: C: (Galaxy) MACS2 peaks threshold
6.0 years ago by Morris_Chair ▴ 370
0
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1
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2.5k
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Comment: C: (Galaxy) MACS2 peaks threshold
6.0 years ago by Morris_Chair ▴ 370
4
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7
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2.5k
views
(Galaxy) MACS2 peaks threshold
ChIP-Seq macs2
6.0 years ago by Morris_Chair ▴ 370
0
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1
reply
1.7k
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Comment: C: MACS2 and single file for analysis
6.0 years ago by Morris_Chair ▴ 370
0
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1
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1.7k
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Comment: C: MACS2 and single file for analysis
6.0 years ago by Morris_Chair ▴ 370
0
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1
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1.7k
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Comment: C: MACS2 and single file for analysis
6.0 years ago by Morris_Chair ▴ 370
6
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2
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6.0k
views
SLURM on Mac OS
ChIP-Seq
6.0 years ago by Morris_Chair ▴ 370
3
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7
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1.7k
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MACS2 and single file for analysis
ChIP-Seq
6.0 years ago by Morris_Chair ▴ 370
2
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1
reply
1.5k
views
Pheatmap and SD
RNA-Seq
updated 6.0 years ago by 89k • written 6.0 years ago by ▴ 370
1
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0
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18k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
6.0 years ago by Morris_Chair ▴ 370
0
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0
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18k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
6.0 years ago by Morris_Chair ▴ 370
0
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1
reply
18k
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Comment: C: STAR genome index with and/or with out *.gtf annotation
6.0 years ago by Morris_Chair ▴ 370
0
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1
reply
9.3k
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Comment: C: Comparing FPKM values in different genes
6.0 years ago by Morris_Chair ▴ 370
0
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1
reply
9.3k
views
Comment: C: Comparing FPKM values in different genes
6.0 years ago by Morris_Chair ▴ 370
0
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1
reply
9.3k
views
Comment: A: Comparing FPKM values in different genes
6.0 years ago by Morris_Chair ▴ 370
0
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0
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1.5k
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Comment: C: Which axis to look for in PCA plot to understand the sample clustering
6.1 years ago by Morris_Chair ▴ 370
4
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1
reply
2.5k
views
Salmon GC bias with caution
RNA-Seq salmon
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 370
0
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1
reply
2.8k
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Comment: Comment: Metric to use for RNAseq expression matrix
updated 17 months ago by 45k • written 6.1 years ago by ▴ 370
0
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2
replies
7.5k
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Comment: C: UMAP vs "rigorous" t-SNE
6.1 years ago by Morris_Chair ▴ 370
0
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0
replies
15k
views
Comment: C: GSEA error - After pruning, none of the gene sets passed size thresholds
6.1 years ago by Morris_Chair ▴ 370
0
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1
reply
5.9k
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Comment: C: Batch effect, how to create a model matrix
6.1 years ago by Morris_Chair ▴ 370
0
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1
reply
5.9k
views
Comment: C: Batch effect, how to create a model matrix
6.1 years ago by Morris_Chair ▴ 370
0
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0
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3.4k
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Comment: C: including batch in design~
6.2 years ago by Morris_Chair ▴ 370
0
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1
reply
3.4k
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Comment: C: including batch in design~
6.2 years ago by Morris_Chair ▴ 370
0
votes
1
reply
3.4k
views
Comment: C: including batch in design~
6.2 years ago by Morris_Chair ▴ 370
0
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1
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3.4k
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Comment: C: including batch in design~
6.2 years ago by Morris_Chair ▴ 370
0
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1
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5.9k
views
Comment: C: adding batch variable in colData(dds)
6.2 years ago by Morris_Chair ▴ 370
2
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8
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3.4k
views
including batch in design~
DESeq2 RNA-Seq
6.2 years ago by Morris_Chair ▴ 370
0
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0
replies
1.5k
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Comment: C: Merge DEseq and Cufflinks outputs
6.2 years ago by Morris_Chair ▴ 370
0
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0
replies
4.6k
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Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
6.2 years ago by Morris_Chair ▴ 370
0
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0
replies
10k
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Comment: C: Ballgown Error in file(file, "rt") : invalid 'description' argument
6.2 years ago by Morris_Chair ▴ 370
0
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0
replies
2.6k
views
Comment: C: Setting Up Model in DeSeq2
6.2 years ago by Morris_Chair ▴ 370
0
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1
reply
11k
views
Comment: C: annotation - biomaRt - getBM - multiple entrez ID
6.2 years ago by Morris_Chair ▴ 370
0
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1
reply
4.6k
views
Comment: C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri
6.2 years ago by Morris_Chair ▴ 370
0
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0
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4.6k
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Comment: C: Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
6.2 years ago by Morris_Chair ▴ 370
1
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1
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4.6k
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Answer: A: Is Ingenuity Pathway Analysis still relevant for analyzing RNA-seq data?
6.2 years ago by Morris_Chair ▴ 370
2
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2
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1.4k
views
convert MSTRG to human-readable format
RNA-Seq MSTRG
6.2 years ago by Morris_Chair ▴ 370
1
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0
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5.2k
views
Comment: C: How to avoid MSTRG from StringTie
6.2 years ago by Morris_Chair ▴ 370
0
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0
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2.9k
views
Comment: C: ballgown and pData
6.2 years ago by Morris_Chair ▴ 370
231 results • Page 3 of 5
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