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1
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1
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223
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Retrieve a % coverage for each transcript
RNA-seq
updated 8 days ago by 43k • written 8 days ago by ▴ 40
0
votes
0
replies
311
views
Kraken2 + Bracken with short reads (~20 bases) as input
Bracken smallRNAseq Kraken2
8 months ago by jammydodger123456 ▴ 40
0
votes
1
reply
697
views
Comment: Comment: miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
11 months ago by jammydodger123456 ▴ 40
1
vote
3
replies
697
views
miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
small RNA miRDeep2 sequencing
updated 11 months ago by ★ 1.7k • written 11 months ago by ▴ 40
0
votes
1
reply
1.2k
views
miRDeep2 Mapper "Bowtie mapping tool not installed"
RNA-Seq miRNA bowtie
updated 4.0 years ago by ★ 1.3k • written 4.0 years ago by ▴ 40
1
vote
1
reply
1.7k
views
Stringtie merge generates close duplicates of original transcripts
Stringtie
5.8 years ago by jammydodger123456 ▴ 40
3
votes
4
replies
3.2k
views
Stringtie output gtf file only contains STRG transripts, no original annotations
stringtie
5.8 years ago by jammydodger123456 ▴ 40
0
votes
1
reply
3.2k
views
Comment: C: Stringtie output gtf file only contains STRG transripts, no original annotations
5.9 years ago by jammydodger123456 ▴ 40
0
votes
1
reply
1.8k
views
Comment: C: FPKM values all 0 from Stringtie
6.2 years ago by jammydodger123456 ▴ 40
0
votes
1
reply
1.8k
views
Comment: C: FPKM values all 0 from Stringtie
6.2 years ago by jammydodger123456 ▴ 40
1
vote
5
replies
1.8k
views
FPKM values all 0 from Stringtie
RNA-Seq Stringtie
6.2 years ago by jammydodger123456 ▴ 40
0
votes
0
replies
2.1k
views
Comment: C: Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff re
6.7 years ago by jammydodger123456 ▴ 40
0
votes
2
replies
2.1k
views
Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff requires at least 2 SAM files"
RNA-Seq cufflinks cuffdiff
updated 6.7 years ago by ★ 1.6k • written 6.7 years ago by ▴ 40
0
votes
1
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2.3k
views
Comment: C: Differences in FPKM values for same sample in multiple comparisons
6.7 years ago by jammydodger123456 ▴ 40
2
votes
2
replies
2.9k
views
Presenting differential expression data containing infinite log2(Fold Change)s
RNA-Seq
updated 6.7 years ago by ★ 1.6k • written 6.7 years ago by ▴ 40
4
votes
7
replies
2.3k
views
Differences in FPKM values for same sample in multiple comparisons
cufflinks RNA-Seq
6.7 years ago by jammydodger123456 ▴ 40
0
votes
0
replies
2.3k
views
Answer: A: Differences in FPKM values for same sample in multiple comparisons
6.7 years ago by jammydodger123456 ▴ 40
0
votes
0
replies
2.3k
views
Comment: C: Differences in FPKM values for same sample in multiple comparisons
6.7 years ago by jammydodger123456 ▴ 40
0
votes
0
replies
1.8k
views
Comment: C: Cuffdiff "No such file or directory" error
6.7 years ago by jammydodger123456 ▴ 40
0
votes
1
reply
1.8k
views
Comment: C: Cuffdiff "No such file or directory" error
6.7 years ago by jammydodger123456 ▴ 40
1
vote
4
replies
1.8k
views
Cuffdiff "No such file or directory" error
cuffdiff cufflinks RNA-Seq
6.7 years ago by jammydodger123456 ▴ 40
1
vote
1
reply
1.1k
views
Concatenate F read files & concatenate R read files in attempts for improved transcriptome?
RNA-Seq cufflinks
6.7 years ago by jammydodger123456 ▴ 40
3
votes
2
replies
2.2k
views
Tophat Error Message
tophat RNA-Seq
updated 6.7 years ago by 6.5k • written 6.7 years ago by ▴ 40
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