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Comment: Comment: Extract reads that didn't contribute to miRNAs following miRDeep2 analysis
8 months ago by jammydodger123456 ▴ 40
1
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3
replies
628
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Extract reads that didn't contribute to miRNAs following miRDeep2 analysis
miRNA miRDeep2 small RNA
updated 8 months ago by 154k • written 8 months ago by ▴ 40
1
vote
1
reply
546
views
Retrieve a % coverage for each transcript
RNA-seq
updated 17 months ago by 45k • written 17 months ago by ▴ 40
0
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0
replies
678
views
Kraken2 + Bracken with short reads (~20 bases) as input
Bracken smallRNAseq Kraken2
2.2 years ago by jammydodger123456 ▴ 40
0
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1
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1.4k
views
Comment: Comment: miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
2.4 years ago by jammydodger123456 ▴ 40
1
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3
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1.4k
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miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
small RNA miRDeep2 sequencing
updated 2.4 years ago by ★ 1.9k • written 2.4 years ago by ▴ 40
0
votes
1
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1.6k
views
miRDeep2 Mapper "Bowtie mapping tool not installed"
RNA-Seq miRNA bowtie
updated 5.5 years ago by ★ 1.3k • written 5.5 years ago by ▴ 40
1
vote
1
reply
2.0k
views
Stringtie merge generates close duplicates of original transcripts
Stringtie
7.2 years ago by jammydodger123456 ▴ 40
3
votes
4
replies
3.8k
views
Stringtie output gtf file only contains STRG transripts, no original annotations
stringtie
7.2 years ago by jammydodger123456 ▴ 40
0
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1
reply
3.8k
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Comment: C: Stringtie output gtf file only contains STRG transripts, no original annotations
7.3 years ago by jammydodger123456 ▴ 40
0
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1
reply
2.3k
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Comment: C: FPKM values all 0 from Stringtie
7.6 years ago by jammydodger123456 ▴ 40
0
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1
reply
2.3k
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Comment: C: FPKM values all 0 from Stringtie
7.6 years ago by jammydodger123456 ▴ 40
1
vote
5
replies
2.3k
views
FPKM values all 0 from Stringtie
RNA-Seq Stringtie
7.6 years ago by jammydodger123456 ▴ 40
0
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0
replies
2.5k
views
Comment: C: Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff re
8.1 years ago by jammydodger123456 ▴ 40
0
votes
2
replies
2.5k
views
Cuffdiff contrast run error: "Malformed record in sample sheet" and "cuffdiff requires at least 2 SAM files"
RNA-Seq cufflinks cuffdiff
updated 8.1 years ago by ★ 1.6k • written 8.1 years ago by ▴ 40
0
votes
1
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2.9k
views
Comment: C: Differences in FPKM values for same sample in multiple comparisons
8.1 years ago by jammydodger123456 ▴ 40
2
votes
2
replies
3.7k
views
Presenting differential expression data containing infinite log2(Fold Change)s
RNA-Seq
updated 8.1 years ago by ★ 1.6k • written 8.1 years ago by ▴ 40
0
votes
0
replies
2.9k
views
Answer: A: Differences in FPKM values for same sample in multiple comparisons
8.1 years ago by jammydodger123456 ▴ 40
4
votes
7
replies
2.9k
views
Differences in FPKM values for same sample in multiple comparisons
cufflinks RNA-Seq
8.1 years ago by jammydodger123456 ▴ 40
0
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0
replies
2.9k
views
Comment: C: Differences in FPKM values for same sample in multiple comparisons
8.1 years ago by jammydodger123456 ▴ 40
0
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0
replies
2.2k
views
Comment: C: Cuffdiff "No such file or directory" error
8.1 years ago by jammydodger123456 ▴ 40
0
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1
reply
2.2k
views
Comment: C: Cuffdiff "No such file or directory" error
8.2 years ago by jammydodger123456 ▴ 40
1
vote
4
replies
2.2k
views
Cuffdiff "No such file or directory" error
cuffdiff cufflinks RNA-Seq
8.2 years ago by jammydodger123456 ▴ 40
1
vote
1
reply
1.3k
views
Concatenate F read files & concatenate R read files in attempts for improved transcriptome?
RNA-Seq cufflinks
8.2 years ago by jammydodger123456 ▴ 40
3
votes
2
replies
2.5k
views
Tophat Error Message
tophat RNA-Seq
updated 8.2 years ago by 6.7k • written 8.2 years ago by ▴ 40
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