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Showing :
questions
2
votes
4
replies
3.7k
views
Need help teasing out insertions and deletions with bcftools stats file.vcf > file.stats
bcftools
indel
vcf
insertion
deletion
updated 19 months ago by
Afif Elghraoui
• 0 • written 6.6 years ago by
oars
▴ 200
6
votes
13
replies
24k
views
R - Multiple boxplots
R
Bioconductor
updated 6.2 years ago by
piyushjo
▴ 710 • written 6.2 years ago by
oars
▴ 200
11
votes
11
replies
4.7k
views
R Update on Linux
R
Bioconductor
Linux
6.2 years ago by
oars
▴ 200
5
votes
6
replies
3.3k
views
Locating Multiple Alternate Alleles in gatk.vcf file
GATK
VCF
updated 6.2 years ago by
Kevin Blighe
88k • written 6.6 years ago by
oars
▴ 200
19
votes
14
replies
1.8k
views
R Syntax Question, Bioconductor data
R
Bioconductor
updated 6.2 years ago by
Friederike
9.0k • written 6.2 years ago by
oars
▴ 200
5
votes
9
replies
12k
views
Error with samtools faidx...Different line length in sequence
samtools
faidx
updated 6.4 years ago by
Biostar
20 • written 6.6 years ago by
oars
▴ 200
15
votes
7
replies
9.9k
views
Variant Calls: Freebayes vs GATK
vcf
freebayes
gatk
updated 19 months ago by
Ram
44k • written 6.6 years ago by
oars
▴ 200
8
votes
3
replies
7.6k
views
Identifying Heterozygous Variants in VCF file using vcftools or bcftools
Heterozygous
vcftools
bcftools
updated 6.6 years ago by
Kevin Blighe
88k • written 6.6 years ago by
oars
▴ 200
13
votes
13
replies
2.8k
views
Simple count of dbSNP (rs...) from .vcf file
vcf
dbSNP
updated 19 months ago by
Ram
44k • written 6.6 years ago by
oars
▴ 200
8
votes
4
replies
8.0k
views
GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
GATK
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
oars
▴ 200
3
votes
2
replies
3.0k
views
Running Picard as an Executable Program
Picard
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
oars
▴ 200
4
votes
5
replies
5.6k
views
samtools - Finding Average Fragment size for pair?
samtools
updated 6.6 years ago by
michael.ante
★ 3.8k • written 6.6 years ago by
oars
▴ 200
6
votes
5
replies
5.1k
views
samtools view: failed to open "sort" for reading: No such file or directory
samtools
updated 6.6 years ago by
Pierre Lindenbaum
164k • written 6.6 years ago by
oars
▴ 200
1
vote
8
replies
5.5k
views
fast-dump error, SRA Toolkit is Updated???
fastq-dump
SRAtoolkit
updated 15 months ago by
Ram
44k • written 6.6 years ago by
oars
▴ 200
2
votes
2
replies
1.7k
views
Sorting file by column, with missing values
glimmer
sort
awk
6.7 years ago by
oars
▴ 200
1
vote
3
replies
1.8k
views
grep errors for FASTA file (possible glimmer error?)
grep
glimmer
6.7 years ago by
oars
▴ 200
0
votes
1
reply
2.5k
views
New to Glimmer: trouble with .icm file
glimmer
gene prediction
6.7 years ago by
oars
▴ 200
17
votes
10
replies
10k
views
6 follow
FASTQ Phred33 average base quality score
FASTQ
Phred33
ASCII
updated 15 months ago by
susan.klein
▴ 30 • written 6.7 years ago by
oars
▴ 200
4
votes
3
replies
7.3k
views
Awk command for fastq read length and number of reads?
awk
fastq
6.7 years ago by
oars
▴ 200
4
votes
4
replies
2.4k
views
Ensembl API, command-line argument
ensembl API
bash
python
CDS
updated 7.1 years ago by
Alex Reynolds
35k • written 7.1 years ago by
oars
▴ 200
6
votes
13
replies
4.1k
views
Using Terminal to Connect to Ensembl public MySQL Servers
mySQL
Terminal
Ensembl
7.1 years ago by
oars
▴ 200
5
votes
16
replies
5.8k
views
Python Regular Expressions to extract the transcript ID from lines of GTF file
python
transcript_id
GTF
updated 7.1 years ago by
Matteo Schiavinato
★ 3.6k • written 7.1 years ago by
oars
▴ 200
7
votes
15
replies
3.2k
views
Locating longest gene, CDS in Ensembl GTF
Ensembl
GTF
longest gene
CDS
7.2 years ago by
oars
▴ 200
23 results • Page
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