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0
votes
3
replies
412
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
updated 10 days ago by
colindaven
6.4k • written 19 days ago by
rj.rezwan
• 0
0
votes
0
replies
412
views
Comment:
Comment: How to identify gaps in a genome?
18 days ago by
rj.rezwan
• 0
3
votes
1
reply
278
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 22 days ago by
Ram
43k • written 22 days ago by
rj.rezwan
• 0
0
votes
0
replies
294
views
Comment:
Comment: kmer analysis for genome size estimation
29 days ago by
rj.rezwan
• 0
0
votes
0
replies
294
views
Comment:
Comment: kmer analysis for genome size estimation
29 days ago by
rj.rezwan
• 0
0
votes
4
replies
294
views
kmer analysis for genome size estimation
kmer
merqury
allotetraploid
pacbio
hifiasm
29 days ago by
rj.rezwan
• 0
0
votes
0
replies
431
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 weeks ago by
rj.rezwan
• 0
0
votes
1
reply
431
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 weeks ago by
rj.rezwan
• 0
0
votes
1
reply
431
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
8 weeks ago by
rj.rezwan
• 0
0
votes
6
replies
431
views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa
mapping
genome
samtools
plants
8 weeks ago by
rj.rezwan
• 0
0
votes
0
replies
134
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant
pacbio
assembly
genome
Hi-C
8 weeks ago by
rj.rezwan
• 0
1
vote
1
reply
232
views
Is there any database for transposable elements in cactus plants
EDTA
transposable-elements
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
rj.rezwan
• 0
0
votes
0
replies
522
views
Comment:
Comment: allele matching between identical genotypes
11 weeks ago by
rj.rezwan
• 0
0
votes
4
replies
522
views
allele matching between identical genotypes
haplotyping
plink
vcf
GATK
varaint
11 weeks ago by
rj.rezwan
• 0
0
votes
0
replies
522
views
Comment:
Comment: allele matching between identical genotypes
3 months ago by
rj.rezwan
• 0
0
votes
1
reply
363
views
how to run the compare_genomes for comparative analysis
genome
orthofinder
evolution
updated 4 months ago by
dthorbur
★ 1.9k • written 4 months ago by
rj.rezwan
• 0
0
votes
2
replies
913
views
Comment:
Comment: How to download multiple genome files using command line (MacOS) using datasets
5 months ago by
rj.rezwan
• 0
0
votes
0
replies
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
updated 6 months ago by
Ram
43k • written 6 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
rj.rezwan
• 0
1
vote
10
replies
1.0k
views
file conversion from gtf to gff3 for evidence modeler
gff3
stringtie
gtf
6 months ago by
rj.rezwan
• 0
0
votes
1
reply
727
views
Comment:
Comment: samtools produces truncated error during merging the bam files
6 months ago by
rj.rezwan
• 0
2
votes
3
replies
727
views
samtools produces truncated error during merging the bam files
bam
samtools
HISAT
updated 6 months ago by
Ram
43k • written 6 months ago by
rj.rezwan
• 0
2
votes
5
replies
956
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 6 months ago by
Ram
43k • written 8 months ago by
rj.rezwan
• 0
0
votes
1
reply
853
views
Comment:
Comment: investigate the inversions in comparison of assembled genome with reference geno
8 months ago by
rj.rezwan
• 0
0
votes
3
replies
853
views
investigate the inversions in comparison of assembled genome with reference genome
genome
assembly
scaffold
ragtag
dotplot
updated 8 months ago by
samuel.a.odonnell
▴ 520 • written 8 months ago by
rj.rezwan
• 0
0
votes
1
reply
933
views
Comment:
Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
8 months ago by
rj.rezwan
• 0
2
votes
3
replies
933
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio
assembly
coverage
updated 8 months ago by
liorglic
★ 1.4k • written 9 months ago by
rj.rezwan
• 0
0
votes
0
replies
699
views
Comment:
Comment: How to make the SNP density plot using hapmap file
9 months ago by
rj.rezwan
• 0
1
vote
2
replies
699
views
How to make the SNP density plot using hapmap file
vcf
haplotype
hapmap
CMplot
9 months ago by
rj.rezwan
• 0
0
votes
0
replies
336
views
How to perform a phylogenetic analysis from a vcf file
variants
haplotyping
phylogeny
vcf
11 months ago by
rj.rezwan
• 0
4
votes
2
replies
914
views
How to calculate kinship matrix table from vcf file
variants
haplotyping
kinship
heatmap
updated 11 months ago by
chrchang523
10k • written 11 months ago by
rj.rezwan
• 0
0
votes
0
replies
294
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping
varaints
12 months ago by
rj.rezwan
• 0
0
votes
0
replies
665
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
12 months ago by
rj.rezwan
• 0
0
votes
0
replies
665
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
12 months ago by
rj.rezwan
• 0
2
votes
6
replies
665
views
how to make a header name in a haplotyping script of gatk?
headername
gatk
haplotypecalling
12 months ago by
rj.rezwan
• 0
0
votes
1
reply
665
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
12 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 12 months ago by
Ram
43k • written 12 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
12 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
12 months ago by
rj.rezwan
• 0
2
votes
7
replies
1.0k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling
CombineGVCFs
GATK
updated 12 months ago by
Ram
43k • written 12 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.0k
views
Comment:
Comment: error with CombineGVCFs to join large number of files
13 months ago by
rj.rezwan
• 0
6
votes
5
replies
1.0k
views
error with CombineGVCFs to join large number of files
haplotypecalling
CombineGVCFs
GATK
13 months ago by
rj.rezwan
• 0
1
vote
1
reply
422
views
Why GATK is slow with haplotypecalling
GATK
HaplotypeCalling
updated 13 months ago by
Pierre Lindenbaum
161k • written 13 months ago by
rj.rezwan
• 0
0
votes
0
replies
1.4k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
14 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
14 months ago by
rj.rezwan
• 0
0
votes
4
replies
1.4k
views
GATK error of Argument --emit-ref-confidence
argument
GATK
HaplotypeCaller
14 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.6k
views
Comment:
Comment: GATK showing error of reference file index
updated 14 months ago by
Ram
43k • written 14 months ago by
rj.rezwan
• 0
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