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How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
5 days ago by rj.rezwan • 0
4
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2
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189
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How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 8 days ago by 10k • written 8 days ago by • 0
0
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0
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123
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how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
4 weeks ago by rj.rezwan • 0
0
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0
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257
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Comment: Comment: how to make a header name in a haplotyping script of gatk?
8 weeks ago by rj.rezwan • 0
0
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0
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257
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Comment: Comment: how to make a header name in a haplotyping script of gatk?
8 weeks ago by rj.rezwan • 0
2
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6
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257
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how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
8 weeks ago by rj.rezwan • 0
0
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1
reply
257
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
8 weeks ago by rj.rezwan • 0
0
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1
reply
371
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 8 weeks ago by 39k • written 8 weeks ago by • 0
0
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1
reply
371
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Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
8 weeks ago by rj.rezwan • 0
0
votes
1
reply
371
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
8 weeks ago by rj.rezwan • 0
2
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7
replies
371
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 8 weeks ago by 39k • written 8 weeks ago by • 0
0
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1
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428
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Comment: Comment: error with CombineGVCFs to join large number of files
9 weeks ago by rj.rezwan • 0
6
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5
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428
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error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
9 weeks ago by rj.rezwan • 0
1
vote
1
reply
205
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 11 weeks ago by 155k • written 11 weeks ago by • 0
0
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0
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465
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Comment: Comment: GATK error of Argument --emit-ref-confidence
3 months ago by rj.rezwan • 0
0
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1
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465
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Comment: Comment: GATK error of Argument --emit-ref-confidence
3 months ago by rj.rezwan • 0
0
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4
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465
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GATK error of Argument --emit-ref-confidence
argument GATK HaplotypeCaller
3 months ago by rj.rezwan • 0
0
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1
reply
587
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Comment: Comment: GATK showing error of reference file index
updated 3 months ago by 39k • written 3 months ago by • 0
0
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1
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587
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Comment: Comment: GATK showing error of reference file index
3 months ago by rj.rezwan • 0
0
votes
5
replies
587
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GATK showing error of reference file index
GATK HaplotypeCaller
updated 3 months ago by 39k • written 3 months ago by • 0
0
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0
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332
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Comment: Comment: does warning has an impact on the markduplication output file?
3 months ago by rj.rezwan • 0
2
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2
replies
332
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does warning has an impact on the markduplication output file?
markduplication picard warning
updated 3 months ago by 155k • written 3 months ago by • 0
1
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1
reply
278
views
Improve the bash code for picard analysis
bash picard slurm
updated 4 months ago by 155k • written 4 months ago by • 0
0
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3
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403
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best way to learn bash scripting
bash coding sequncing
updated 4 months ago by ▴ 810 • written 4 months ago by • 0
1
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1
reply
331
views
is it mandatory to use fixmate?
picard genome mapping fixmate
updated 5 months ago by ★ 1.6k • written 5 months ago by • 0
0
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0
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502
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Comment: Comment: Markduplicate error in picard
5 months ago by rj.rezwan • 0
1
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2
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502
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Markduplicate error in picard
picard maarkduplicate genome mapping
5 months ago by rj.rezwan • 0
1
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1
reply
378
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why sorted.bam file size is increased after using fixmate in picard
picard genome fixmate
updated 5 months ago by 155k • written 5 months ago by • 0
1
vote
1
reply
329
views
How to cross-check the mapping % quality of reads
BWA genome mapping bamtools
updated 5 months ago by 130k • written 5 months ago by • 0
0
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0
replies
605
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Comment: Comment: multiple alignment of genomes via LASTZ
5 months ago by rj.rezwan • 0
0
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1
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605
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Comment: Comment: multiple alignment of genomes via LASTZ
updated 5 months ago by 39k • written 5 months ago by • 0
3
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5
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605
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multiple alignment of genomes via LASTZ
fasta alignment lastz
updated 5 months ago by 39k • written 5 months ago by • 0
0
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0
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431
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Comment: Comment: How to select the right reference genome
8 months ago by rj.rezwan • 0
0
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0
replies
431
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Comment: Comment: How to select the right reference genome
8 months ago by rj.rezwan • 0
1
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4
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431
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How to select the right reference genome
genome reads mapping diploid
8 months ago by rj.rezwan • 0
0
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9
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1.4k
views
Apple gene ID conversion tool
apple gene ID conversion
updated 18 months ago by 130k • written 3.5 years ago by • 0
0
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0
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825
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Comment: C: How to extract particular gene sequence from a file using gene IDs in LINUX
2.8 years ago by rj.rezwan • 0
1
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2
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825
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How to extract particular gene sequence from a file using gene IDs in LINUX
gene sequence linux command
updated 2.8 years ago by 130k • written 2.8 years ago by • 0
0
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0
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1.4k
views
Comment: C: Apple gene ID conversion tool
updated 3.4 years ago by 130k • written 3.4 years ago by • 0
0
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1
reply
282k
views
Comment: Comment: Gene Id Conversion Tool
updated 16 months ago by 39k • written 3.5 years ago by • 0
0
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0
replies
1.7k
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Comment: C: Facing trouble to analyze the different Rice genes on David Bioinformatics Resou
5.1 years ago by rj.rezwan • 0
0
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1
reply
1.7k
views
Comment: C: Facing trouble to analyze the different Rice genes on David Bioinformatics Resou
5.1 years ago by rj.rezwan • 0
0
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1
reply
1.7k
views
Comment: C: Facing trouble to analyze the different Rice genes on David Bioinformatics Resou
5.1 years ago by rj.rezwan • 0
0
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8
replies
1.7k
views
Facing trouble to analyze the different Rice genes on David Bioinformatics Resources 6.8
RNA-Seq David 6.8
5.1 years ago by rj.rezwan • 0
0
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1
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1.7k
views
Comment: A: Facing trouble to analyze the different Rice genes on David Bioinformatics Resou
5.1 years ago by rj.rezwan • 0
10
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7
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8.3k
views
6 follow
How to find out the insert size in RNA seq data
RNA-Seq
updated 5.2 years ago by ▴ 990 • written 5.8 years ago by • 0
1
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4
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2.0k
views
Submission of RNA-seq data in NCBI Sequence Read Archive (SRA)
NCBI SRA
5.4 years ago by rj.rezwan • 0
0
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1
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2.0k
views
Answer: A: Submission of RNA-seq data in NCBI Sequence Read Archive (SRA)
5.4 years ago by rj.rezwan • 0
5
votes
12
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5.2k
views
6 follow
Gene ontology and KEGG pathway analysis of rice RNA-seq data
RNA-Seq
updated 5.5 years ago by 7.5k • written 5.6 years ago by • 0
0
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0
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5.2k
views
Comment: C: Gene ontology and KEGG pathway analysis of rice RNA-seq data
5.6 years ago by rj.rezwan • 0
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