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348
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Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
10 days ago by
rj.rezwan
• 0
0
votes
1
reply
348
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
10 days ago by
rj.rezwan
• 0
0
votes
1
reply
348
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
10 days ago by
rj.rezwan
• 0
0
votes
6
replies
348
views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa
mapping
genome
samtools
plants
10 days ago by
rj.rezwan
• 0
0
votes
0
replies
95
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant
pacbio
assembly
genome
Hi-C
14 days ago by
rj.rezwan
• 0
1
vote
1
reply
194
views
Is there any database for transposable elements in cactus plants
EDTA
transposable-elements
updated 21 days ago by
Ram
43k • written 22 days ago by
rj.rezwan
• 0
0
votes
0
replies
387
views
Comment:
Comment: allele matching between identical genotypes
5 weeks ago by
rj.rezwan
• 0
0
votes
4
replies
387
views
allele matching between identical genotypes
haplotyping
plink
vcf
GATK
varaint
5 weeks ago by
rj.rezwan
• 0
0
votes
0
replies
387
views
Comment:
Comment: allele matching between identical genotypes
6 weeks ago by
rj.rezwan
• 0
0
votes
1
reply
327
views
how to run the compare_genomes for comparative analysis
genome
orthofinder
evolution
updated 3 months ago by
dthorbur
★ 1.6k • written 3 months ago by
rj.rezwan
• 0
0
votes
2
replies
666
views
Comment:
Comment: How to download multiple genome files using command line (MacOS) using datasets
3 months ago by
rj.rezwan
• 0
0
votes
0
replies
873
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
5 months ago by
rj.rezwan
• 0
0
votes
1
reply
873
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
5 months ago by
rj.rezwan
• 0
0
votes
1
reply
873
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
updated 5 months ago by
Ram
43k • written 5 months ago by
rj.rezwan
• 0
0
votes
1
reply
873
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
5 months ago by
rj.rezwan
• 0
0
votes
1
reply
873
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
5 months ago by
rj.rezwan
• 0
1
vote
10
replies
873
views
file conversion from gtf to gff3 for evidence modeler
gff3
stringtie
gtf
5 months ago by
rj.rezwan
• 0
0
votes
1
reply
637
views
Comment:
Comment: samtools produces truncated error during merging the bam files
5 months ago by
rj.rezwan
• 0
2
votes
3
replies
637
views
samtools produces truncated error during merging the bam files
bam
samtools
HISAT
updated 5 months ago by
Ram
43k • written 5 months ago by
rj.rezwan
• 0
2
votes
5
replies
899
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 5 months ago by
Ram
43k • written 6 months ago by
rj.rezwan
• 0
0
votes
1
reply
749
views
Comment:
Comment: investigate the inversions in comparison of assembled genome with reference geno
7 months ago by
rj.rezwan
• 0
0
votes
3
replies
749
views
investigate the inversions in comparison of assembled genome with reference genome
genome
assembly
scaffold
ragtag
dotplot
updated 7 months ago by
samuel.a.odonnell
▴ 510 • written 7 months ago by
rj.rezwan
• 0
0
votes
1
reply
762
views
Comment:
Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
7 months ago by
rj.rezwan
• 0
2
votes
3
replies
762
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio
assembly
coverage
updated 7 months ago by
liorglic
★ 1.3k • written 7 months ago by
rj.rezwan
• 0
0
votes
0
replies
629
views
Comment:
Comment: How to make the SNP density plot using hapmap file
8 months ago by
rj.rezwan
• 0
1
vote
2
replies
629
views
How to make the SNP density plot using hapmap file
vcf
haplotype
hapmap
CMplot
8 months ago by
rj.rezwan
• 0
0
votes
0
replies
295
views
How to perform a phylogenetic analysis from a vcf file
variants
haplotyping
phylogeny
vcf
9 months ago by
rj.rezwan
• 0
4
votes
2
replies
823
views
How to calculate kinship matrix table from vcf file
variants
haplotyping
kinship
heatmap
updated 9 months ago by
chrchang523
10k • written 9 months ago by
rj.rezwan
• 0
0
votes
0
replies
276
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping
varaints
10 months ago by
rj.rezwan
• 0
0
votes
0
replies
590
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
11 months ago by
rj.rezwan
• 0
0
votes
0
replies
590
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
11 months ago by
rj.rezwan
• 0
2
votes
6
replies
590
views
how to make a header name in a haplotyping script of gatk?
headername
gatk
haplotypecalling
11 months ago by
rj.rezwan
• 0
0
votes
1
reply
590
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
11 months ago by
rj.rezwan
• 0
0
votes
1
reply
929
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 11 months ago by
Ram
43k • written 11 months ago by
rj.rezwan
• 0
0
votes
1
reply
929
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
11 months ago by
rj.rezwan
• 0
0
votes
1
reply
929
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
11 months ago by
rj.rezwan
• 0
2
votes
7
replies
929
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling
CombineGVCFs
GATK
updated 11 months ago by
Ram
43k • written 11 months ago by
rj.rezwan
• 0
0
votes
1
reply
917
views
Comment:
Comment: error with CombineGVCFs to join large number of files
11 months ago by
rj.rezwan
• 0
6
votes
5
replies
917
views
error with CombineGVCFs to join large number of files
haplotypecalling
CombineGVCFs
GATK
11 months ago by
rj.rezwan
• 0
1
vote
1
reply
383
views
Why GATK is slow with haplotypecalling
GATK
HaplotypeCalling
updated 12 months ago by
Pierre Lindenbaum
160k • written 12 months ago by
rj.rezwan
• 0
0
votes
0
replies
1.2k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
13 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.2k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
13 months ago by
rj.rezwan
• 0
0
votes
4
replies
1.2k
views
GATK error of Argument --emit-ref-confidence
argument
GATK
HaplotypeCaller
13 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: GATK showing error of reference file index
updated 13 months ago by
Ram
43k • written 13 months ago by
rj.rezwan
• 0
0
votes
1
reply
1.4k
views
Comment:
Comment: GATK showing error of reference file index
13 months ago by
rj.rezwan
• 0
0
votes
5
replies
1.4k
views
GATK showing error of reference file index
GATK
HaplotypeCaller
updated 13 months ago by
Ram
43k • written 13 months ago by
rj.rezwan
• 0
0
votes
0
replies
553
views
Comment:
Comment: does warning has an impact on the markduplication output file?
13 months ago by
rj.rezwan
• 0
2
votes
2
replies
553
views
does warning has an impact on the markduplication output file?
markduplication
picard
warning
updated 13 months ago by
Pierre Lindenbaum
160k • written 13 months ago by
rj.rezwan
• 0
1
vote
1
reply
464
views
Improve the bash code for picard analysis
bash
picard
slurm
updated 13 months ago by
Pierre Lindenbaum
160k • written 13 months ago by
rj.rezwan
• 0
0
votes
3
replies
694
views
best way to learn bash scripting
bash
coding
sequncing
updated 8 weeks ago by
Jeremy
▴ 880 • written 13 months ago by
rj.rezwan
• 0
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