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238
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Mapping difference with BWA
variant-calling samtools bam BWA genomics
updated 3 months ago by 84k • written 3 months ago by ▴ 10
1
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1
reply
290
views
geom_bar issue in ggplot2 with xlim()
geom_bar ggplot2 statistics R
updated 3 months ago by 84k • written 3 months ago by ▴ 10
0
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3
replies
606
views
How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated 4 months ago by 6.7k • written 4 months ago by ▴ 10
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0
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606
views
Comment: Comment: How to identify gaps in a genome?
4 months ago by rj.rezwan ▴ 10
3
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1
reply
358
views
how to change the gene header names in a fasta file?
fasta bioawk awk seqkit
updated 4 months ago by 44k • written 4 months ago by ▴ 10
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0
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510
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Comment: Comment: kmer analysis for genome size estimation
4 months ago by rj.rezwan ▴ 10
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0
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510
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Comment: Comment: kmer analysis for genome size estimation
4 months ago by rj.rezwan ▴ 10
0
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4
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510
views
kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
4 months ago by rj.rezwan ▴ 10
0
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0
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593
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Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by rj.rezwan ▴ 10
0
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1
reply
593
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by rj.rezwan ▴ 10
0
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1
reply
593
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by rj.rezwan ▴ 10
0
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6
replies
593
views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
5 months ago by rj.rezwan ▴ 10
0
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0
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210
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant pacbio assembly genome Hi-C
6 months ago by rj.rezwan ▴ 10
1
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1
reply
327
views
Is there any database for transposable elements in cactus plants
EDTA transposable-elements
updated 6 months ago by 44k • written 6 months ago by ▴ 10
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0
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694
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Comment: Comment: allele matching between identical genotypes
6 months ago by rj.rezwan ▴ 10
0
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4
replies
694
views
allele matching between identical genotypes
haplotyping plink vcf GATK varaint
6 months ago by rj.rezwan ▴ 10
0
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0
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694
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Comment: Comment: allele matching between identical genotypes
7 months ago by rj.rezwan ▴ 10
0
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1
reply
480
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how to run the compare_genomes for comparative analysis
genome orthofinder evolution
updated 8 months ago by ★ 2.4k • written 8 months ago by ▴ 10
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2
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1.3k
views
Comment: Comment: How to download multiple genome files using command line (MacOS) using datasets
9 months ago by rj.rezwan ▴ 10
0
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0
replies
1.3k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by rj.rezwan ▴ 10
0
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1
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1.3k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by rj.rezwan ▴ 10
0
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1
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1.3k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
updated 10 months ago by 44k • written 10 months ago by ▴ 10
0
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1
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1.3k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by rj.rezwan ▴ 10
0
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1
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1.3k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by rj.rezwan ▴ 10
1
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10
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1.3k
views
file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
10 months ago by rj.rezwan ▴ 10
0
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1
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934
views
Comment: Comment: samtools produces truncated error during merging the bam files
10 months ago by rj.rezwan ▴ 10
2
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3
replies
934
views
samtools produces truncated error during merging the bam files
bam samtools HISAT
updated 10 months ago by 44k • written 10 months ago by ▴ 10
2
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5
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1.1k
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 10 months ago by 44k • written 12 months ago by ▴ 10
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1
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1.0k
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
12 months ago by rj.rezwan ▴ 10
0
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3
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1.0k
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investigate the inversions in comparison of assembled genome with reference genome
genome assembly scaffold ragtag dotplot
updated 12 months ago by ▴ 560 • written 12 months ago by ▴ 10
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1
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1.2k
views
Comment: Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
12 months ago by rj.rezwan ▴ 10
2
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3
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1.2k
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio assembly coverage
updated 12 months ago by ★ 1.4k • written 12 months ago by ▴ 10
0
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0
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852
views
Comment: Comment: How to make the SNP density plot using hapmap file
13 months ago by rj.rezwan ▴ 10
1
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2
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852
views
How to make the SNP density plot using hapmap file
vcf haplotype hapmap CMplot
13 months ago by rj.rezwan ▴ 10
0
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0
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388
views
How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
15 months ago by rj.rezwan ▴ 10
4
votes
2
replies
1.1k
views
How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 15 months ago by 11k • written 15 months ago by ▴ 10
0
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0
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337
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
16 months ago by rj.rezwan ▴ 10
0
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0
replies
822
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by rj.rezwan ▴ 10
0
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0
replies
822
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by rj.rezwan ▴ 10
2
votes
6
replies
822
views
how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
16 months ago by rj.rezwan ▴ 10
0
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1
reply
822
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by rj.rezwan ▴ 10
0
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1
reply
1.2k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 16 months ago by 44k • written 16 months ago by ▴ 10
0
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1
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1.2k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
16 months ago by rj.rezwan ▴ 10
0
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1
reply
1.2k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
16 months ago by rj.rezwan ▴ 10
2
votes
7
replies
1.2k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 16 months ago by 44k • written 16 months ago by ▴ 10
0
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1
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1.2k
views
Comment: Comment: error with CombineGVCFs to join large number of files
17 months ago by rj.rezwan ▴ 10
6
votes
5
replies
1.2k
views
error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
17 months ago by rj.rezwan ▴ 10
1
vote
1
reply
494
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 17 months ago by 163k • written 17 months ago by ▴ 10
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0
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1.6k
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Comment: Comment: GATK error of Argument --emit-ref-confidence
18 months ago by rj.rezwan ▴ 10
0
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1
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1.6k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
18 months ago by rj.rezwan ▴ 10
85 results • Page 1 of 2
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