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0
votes
1
reply
238
views
Mapping difference with BWA
variant-calling
samtools
bam
BWA
genomics
updated 3 months ago by
ATpoint
84k • written 3 months ago by
rj.rezwan
▴ 10
1
vote
1
reply
290
views
geom_bar issue in ggplot2 with xlim()
geom_bar
ggplot2
statistics
R
updated 3 months ago by
ATpoint
84k • written 3 months ago by
rj.rezwan
▴ 10
0
votes
3
replies
606
views
How to identify gaps in a genome?
awk
seqkit
assembly
fasta
genome
updated 4 months ago by
colindaven
6.7k • written 4 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
606
views
Comment:
Comment: How to identify gaps in a genome?
4 months ago by
rj.rezwan
▴ 10
3
votes
1
reply
358
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 4 months ago by
Ram
44k • written 4 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
510
views
Comment:
Comment: kmer analysis for genome size estimation
4 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
510
views
Comment:
Comment: kmer analysis for genome size estimation
4 months ago by
rj.rezwan
▴ 10
0
votes
4
replies
510
views
kmer analysis for genome size estimation
kmer
merqury
allotetraploid
pacbio
hifiasm
4 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
593
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
593
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
593
views
Comment:
Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
5 months ago by
rj.rezwan
▴ 10
0
votes
6
replies
593
views
why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa
mapping
genome
samtools
plants
5 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
210
views
issue with the Arima genomics pipeline for Hi-C scaffolding
plant
pacbio
assembly
genome
Hi-C
6 months ago by
rj.rezwan
▴ 10
1
vote
1
reply
327
views
Is there any database for transposable elements in cactus plants
EDTA
transposable-elements
updated 6 months ago by
Ram
44k • written 6 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
694
views
Comment:
Comment: allele matching between identical genotypes
6 months ago by
rj.rezwan
▴ 10
0
votes
4
replies
694
views
allele matching between identical genotypes
haplotyping
plink
vcf
GATK
varaint
6 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
694
views
Comment:
Comment: allele matching between identical genotypes
7 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
480
views
how to run the compare_genomes for comparative analysis
genome
orthofinder
evolution
updated 8 months ago by
dthorbur
★ 2.4k • written 8 months ago by
rj.rezwan
▴ 10
0
votes
2
replies
1.3k
views
Comment:
Comment: How to download multiple genome files using command line (MacOS) using datasets
9 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
1.3k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
updated 10 months ago by
Ram
44k • written 10 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
10 months ago by
rj.rezwan
▴ 10
1
vote
10
replies
1.3k
views
file conversion from gtf to gff3 for evidence modeler
gff3
stringtie
gtf
10 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
934
views
Comment:
Comment: samtools produces truncated error during merging the bam files
10 months ago by
rj.rezwan
▴ 10
2
votes
3
replies
934
views
samtools produces truncated error during merging the bam files
bam
samtools
HISAT
updated 10 months ago by
Ram
44k • written 10 months ago by
rj.rezwan
▴ 10
2
votes
5
replies
1.1k
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 10 months ago by
Ram
44k • written 12 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.0k
views
Comment:
Comment: investigate the inversions in comparison of assembled genome with reference geno
12 months ago by
rj.rezwan
▴ 10
0
votes
3
replies
1.0k
views
investigate the inversions in comparison of assembled genome with reference genome
genome
assembly
scaffold
ragtag
dotplot
updated 12 months ago by
samuel.a.odonnell
▴ 560 • written 12 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
12 months ago by
rj.rezwan
▴ 10
2
votes
3
replies
1.2k
views
How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio
assembly
coverage
updated 12 months ago by
liorglic
★ 1.4k • written 12 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
852
views
Comment:
Comment: How to make the SNP density plot using hapmap file
13 months ago by
rj.rezwan
▴ 10
1
vote
2
replies
852
views
How to make the SNP density plot using hapmap file
vcf
haplotype
hapmap
CMplot
13 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
388
views
How to perform a phylogenetic analysis from a vcf file
variants
haplotyping
phylogeny
vcf
15 months ago by
rj.rezwan
▴ 10
4
votes
2
replies
1.1k
views
How to calculate kinship matrix table from vcf file
variants
haplotyping
kinship
heatmap
updated 15 months ago by
chrchang523
11k • written 15 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
337
views
how to retrieve the chunk of every chromosome from a vcf file
haplotyping
varaints
16 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
822
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
822
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by
rj.rezwan
▴ 10
2
votes
6
replies
822
views
how to make a header name in a haplotyping script of gatk?
headername
gatk
haplotypecalling
16 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
822
views
Comment:
Comment: how to make a header name in a haplotyping script of gatk?
16 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 16 months ago by
Ram
44k • written 16 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
16 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: why CombineGCVFs in gatk not showing all the samples name?
16 months ago by
rj.rezwan
▴ 10
2
votes
7
replies
1.2k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling
CombineGVCFs
GATK
updated 16 months ago by
Ram
44k • written 16 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.2k
views
Comment:
Comment: error with CombineGVCFs to join large number of files
17 months ago by
rj.rezwan
▴ 10
6
votes
5
replies
1.2k
views
error with CombineGVCFs to join large number of files
haplotypecalling
CombineGVCFs
GATK
17 months ago by
rj.rezwan
▴ 10
1
vote
1
reply
494
views
Why GATK is slow with haplotypecalling
GATK
HaplotypeCalling
updated 17 months ago by
Pierre Lindenbaum
163k • written 17 months ago by
rj.rezwan
▴ 10
0
votes
0
replies
1.6k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
18 months ago by
rj.rezwan
▴ 10
0
votes
1
reply
1.6k
views
Comment:
Comment: GATK error of Argument --emit-ref-confidence
18 months ago by
rj.rezwan
▴ 10
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