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443
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How to identify gaps in a genome?
awk seqkit assembly fasta genome
updated 23 days ago by 6.4k • written 4 weeks ago by • 0
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0
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443
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Comment: Comment: How to identify gaps in a genome?
4 weeks ago by rj.rezwan • 0
3
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1
reply
293
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how to change the gene header names in a fasta file?
fasta bioawk awk seqkit
updated 4 weeks ago by 43k • written 5 weeks ago by • 0
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0
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319
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Comment: Comment: kmer analysis for genome size estimation
6 weeks ago by rj.rezwan • 0
0
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0
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319
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Comment: Comment: kmer analysis for genome size estimation
6 weeks ago by rj.rezwan • 0
0
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4
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319
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kmer analysis for genome size estimation
kmer merqury allotetraploid pacbio hifiasm
6 weeks ago by rj.rezwan • 0
0
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0
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445
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Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
9 weeks ago by rj.rezwan • 0
0
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1
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445
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Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
9 weeks ago by rj.rezwan • 0
0
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1
reply
445
views
Comment: Comment: why the file is low after combining the Hi-C reads using Arima genomics pipeline
9 weeks ago by rj.rezwan • 0
0
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6
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445
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why the file is low after combining the Hi-C reads using Arima genomics pipeline of mapping
bwa mapping genome samtools plants
9 weeks ago by rj.rezwan • 0
0
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0
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141
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issue with the Arima genomics pipeline for Hi-C scaffolding
plant pacbio assembly genome Hi-C
10 weeks ago by rj.rezwan • 0
1
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1
reply
239
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Is there any database for transposable elements in cactus plants
EDTA transposable-elements
updated 11 weeks ago by 43k • written 11 weeks ago by • 0
0
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0
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536
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Comment: Comment: allele matching between identical genotypes
3 months ago by rj.rezwan • 0
0
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4
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536
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allele matching between identical genotypes
haplotyping plink vcf GATK varaint
3 months ago by rj.rezwan • 0
0
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0
replies
536
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Comment: Comment: allele matching between identical genotypes
3 months ago by rj.rezwan • 0
0
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1
reply
374
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how to run the compare_genomes for comparative analysis
genome orthofinder evolution
updated 5 months ago by ★ 2.0k • written 5 months ago by • 0
0
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2
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952
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Comment: Comment: How to download multiple genome files using command line (MacOS) using datasets
5 months ago by rj.rezwan • 0
0
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0
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1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
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1
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1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
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1
reply
1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
updated 7 months ago by 43k • written 7 months ago by • 0
0
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1
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1.0k
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Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
0
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1
reply
1.0k
views
Comment: Comment: file conversion from gtf to gff3 for evidence modeler
7 months ago by rj.rezwan • 0
1
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10
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1.0k
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file conversion from gtf to gff3 for evidence modeler
gff3 stringtie gtf
7 months ago by rj.rezwan • 0
0
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1
reply
739
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Comment: Comment: samtools produces truncated error during merging the bam files
7 months ago by rj.rezwan • 0
2
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3
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739
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samtools produces truncated error during merging the bam files
bam samtools HISAT
updated 7 months ago by 43k • written 7 months ago by • 0
2
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5
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973
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6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 months ago by 43k • written 8 months ago by • 0
0
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1
reply
876
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
9 months ago by rj.rezwan • 0
0
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3
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876
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investigate the inversions in comparison of assembled genome with reference genome
genome assembly scaffold ragtag dotplot
updated 9 months ago by ▴ 520 • written 9 months ago by • 0
0
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1
reply
971
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Comment: Comment: How to find the coverage of the assembled contigs of the PacBio long reads?
9 months ago by rj.rezwan • 0
2
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3
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971
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How to find the coverage of the assembled contigs of the PacBio long reads?
PacBio assembly coverage
updated 9 months ago by ★ 1.4k • written 9 months ago by • 0
0
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0
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711
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Comment: Comment: How to make the SNP density plot using hapmap file
10 months ago by rj.rezwan • 0
1
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2
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711
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How to make the SNP density plot using hapmap file
vcf haplotype hapmap CMplot
10 months ago by rj.rezwan • 0
0
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0
replies
340
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How to perform a phylogenetic analysis from a vcf file
variants haplotyping phylogeny vcf
11 months ago by rj.rezwan • 0
4
votes
2
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933
views
How to calculate kinship matrix table from vcf file
variants haplotyping kinship heatmap
updated 11 months ago by 10k • written 11 months ago by • 0
0
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0
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299
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how to retrieve the chunk of every chromosome from a vcf file
haplotyping varaints
12 months ago by rj.rezwan • 0
0
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0
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678
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
0
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0
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678
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
2
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6
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678
views
how to make a header name in a haplotyping script of gatk?
headername gatk haplotypecalling
13 months ago by rj.rezwan • 0
0
votes
1
reply
678
views
Comment: Comment: how to make a header name in a haplotyping script of gatk?
13 months ago by rj.rezwan • 0
0
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1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
updated 13 months ago by 43k • written 13 months ago by • 0
0
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1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
13 months ago by rj.rezwan • 0
0
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1
reply
1.0k
views
Comment: Comment: why CombineGCVFs in gatk not showing all the samples name?
13 months ago by rj.rezwan • 0
2
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7
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1.0k
views
why CombineGCVFs in gatk not showing all the samples name?
haplotypecalling CombineGVCFs GATK
updated 13 months ago by 43k • written 13 months ago by • 0
0
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1
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1.0k
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Comment: Comment: error with CombineGVCFs to join large number of files
13 months ago by rj.rezwan • 0
6
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5
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1.0k
views
error with CombineGVCFs to join large number of files
haplotypecalling CombineGVCFs GATK
13 months ago by rj.rezwan • 0
1
vote
1
reply
431
views
Why GATK is slow with haplotypecalling
GATK HaplotypeCalling
updated 14 months ago by 161k • written 14 months ago by • 0
0
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0
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1.4k
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Comment: Comment: GATK error of Argument --emit-ref-confidence
14 months ago by rj.rezwan • 0
0
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1
reply
1.4k
views
Comment: Comment: GATK error of Argument --emit-ref-confidence
14 months ago by rj.rezwan • 0
0
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4
replies
1.4k
views
GATK error of Argument --emit-ref-confidence
argument GATK HaplotypeCaller
14 months ago by rj.rezwan • 0
0
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1
reply
1.6k
views
Comment: Comment: GATK showing error of reference file index
updated 14 months ago by 43k • written 15 months ago by • 0
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