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questions
5
votes
5
replies
3.4k
views
bedtools intersect with match on name column
bedtools
intersectbed
5.4 years ago by
corend
▴ 70
8
votes
10
replies
4.2k
views
Ballgown finds few DE genes compared to DESeq
RNA-Seq
DESeq2
Ballgown
updated 5.5 years ago by
shenwei1376
• 0 • written 5.8 years ago by
corend
▴ 70
5
votes
7
replies
1.8k
views
RNAseq analysis with very close species
RNA-Seq
5.6 years ago by
corend
▴ 70
2
votes
5
replies
4.2k
views
Hisat2 multimapped reads
RNA-Seq
alignment
hisat2
updated 5.8 years ago by
Devon Ryan
104k • written 5.8 years ago by
corend
▴ 70
10
votes
18
replies
3.8k
views
6 follow
A very short gene with very high TPM
RNA-Seq
Assembly
updated 6.3 years ago by
Friederike
8.9k • written 6.3 years ago by
corend
▴ 70
8
votes
20
replies
3.0k
views
Why does cufflinks split this transcript?
RNA-Seq
cufflinks
assembly
6.3 years ago by
corend
▴ 70
3
votes
1
reply
1.9k
views
What is an "unanchored contig"?
sequencing
Assembly
updated 6.4 years ago by
h.mon
35k • written 6.4 years ago by
corend
▴ 70
4
votes
7
replies
2.2k
views
How to get an XS field in SAM with unstranded data ?
cufflinks
RNA-Seq
alignment
updated 6.4 years ago by
Friederike
8.9k • written 6.4 years ago by
corend
▴ 70
4
votes
4
replies
1.6k
views
DESeq2 biais when genes are missing from the annotation?
RNA-Seq
DESeq2
updated 6.5 years ago by
h.mon
35k • written 6.5 years ago by
corend
▴ 70
0
votes
1
reply
1.4k
views
Retrieve genes with more than N paralogs on ensembl
genome
gene
ensembl
updated 6.5 years ago by
Jean-Karim Heriche
27k • written 6.5 years ago by
corend
▴ 70
0
votes
1
reply
1.9k
views
cummeRbund grouping by TSS / CDS / Isoforms
RNA-Seq
cufflinks
cummerbund
updated 6.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 6.5 years ago by
corend
▴ 70
3
votes
2
replies
2.3k
views
cuffquant command line error and question
RNA-Seq
software error
Cufflinks
cuffquant
updated 6.6 years ago by
Pierre Lindenbaum
161k • written 6.6 years ago by
corend
▴ 70
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